Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139403843
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Entry
139403843 CDS
T10872
Name
(RefSeq) fibrillin-1-like isoform X1
KO
K06825
fibrillin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04350
TGF-beta signaling pathway
ocla04518
Integrin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
139403843
09133 Signaling molecules and interaction
04518 Integrin signaling
139403843
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139403843
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139403843
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139403843
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_CA
cEGF
hEGF
EGF
TB
FXa_inhibition
EGF_3
Fibrillin_U_N
Plasmod_Pvs28
EGF_FBN_1st
EGF_PEAR1L
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
139403843
NCBI-ProteinID:
XP_071003096
LinkDB
All DBs
Position
Unknown
AA seq
2937 aa
AA seq
DB search
MCRGRLVRLAVGLVAVLSLWTEPGGAEAEQAGGTGGEARLTEGELVSLPLLTVDSEPARQ
TPTQPRASRAKRRGGGTDVLKGPNVCGSRFNSYCCPGWKTLTGGNQCIVPICRSSCGDGF
CSRPNMCTCPTGSISPSCGSMSVQNCNIRCMNGGSCADDHCQCQKGYVGNHCGQPVCETG
CQNGGRCVAPNRCVCTYGFTGAQCERDYRTGPCFASVSNQMCQGQLTGIVCTKTLCCATV
GRAWGHPCEMCPAQPHPCRRGFIPNHRTGACQDVDECQAIPGLCQGGNCINTVGSFQCNC
PAGHKFNEITQKCEDLDECSSIPGLCSGGECSNTVGSYFCRCSQGYYTPVDGSRCIDARG
GYCYASLLNGRCANQNSQLLTKIQCCCDSGRCWSDGSSPELCPMTGTDEYQKLCTQVQTS
PGGGPLPGGGGSLPGGGGTLPGGGGPLPGGGGGRPVVPQVPGIYPRPPYPGPPIPFQPLP
GPGQYPGPIIQTQNISTSITNMCAVFRNLCLNGRCVPSPGSYRCDCNMGFRLDSRGECID
DDECARNPCVNGECVNTAGSYFCQCPAGFQSTATRTECRDLDECVANGRICNNGRCVNTE
GSFHCVCNAGFEISTDGKNCQDMDECLIRNMCLNGMCINDEGSFKCICKHGYLLDPTGRF
CVDIDECETPGICMNGHCVNTEGSFRCECMAGLAVGLDGRVCVDTHMRSTCYGGYKRGQC
VKPFFGAVTKSECCCASVEYAFGESCQPCPPQNSAEFLALCSNGPGTTSDGRDINECALD
PDICQNGVCENMLRTYKCNCNMGFEVDTTGKHCVDIDECAVNRLLCDNGLCRNTPGSFTC
HCPTGFLFHAETDVCEDIDECESKPCVNGDCKNSPGSYVCLCSAGSTLDASGTQCIETSK
GTCWLKVINGRCEININGATLKSHCCSTLGEAWGSPCAKCEPDHFCTKGYARVRGTICED
VNECEVFPGVCINGKCVNTVGSFICQCPSGMTVDATGRTCIDLRTEQCYLSHEDERCGAP
IQGRHRVDACCCSVGVAWGPECDECPEKGSQEYSQLCPRGPGFANRGDFINGRPFLKDIN
ECKMIHSLCSNGKCRNTIGSFRCRCDNGFALDSDERNCTDIDECRISPDLCGQGTCVNTG
GNFECECFEGYESGFMMMKNCMDIDECERNPLLCRGGECVNNEGSFQCLCPDGHEIAPDG
SACLDINECELSEKLCRNGQCVNMIGRYQCSCDTGYKSTEDRLACVDIDECTIQNGGCET
FCTNSEGSYECSCRSGYALMPDLRTCTDIDECEDSPDICDGGQCTNIPGEYQCLCFDGFM
SSEDMKTCLDVDECELNPNICLSGNCENSKGSFICHCDKGYSVRKGTTGCTDINECEIGA
HNCDRHASCTNTAGSFKCSCAPGWIGDGIKCTDLDECSNGTHMCSNNADCLNTMGSYRCH
CKDGFSGDGFYCSDSDECADNVNLCESGNCLNVPGGYRCECDMGFIPTPDGKACEDIDEC
TFADICVNGRCQNIPGLFRCQCSIGYELDRSGGNCTDINECADPTTCISGLCVNTPGSYI
CNCPQDFELNPTRVGCVDTRSGDCYLDVRMRGDASESLVCSNEIGVAVSKASCCCSLGQA
WGTPCESCPPLNSSEYKTLCPGGEGFRPNPITVILEDINECQELPGLCQGGNCINTFGSF
QCECPKGFQLNEENRVCEDVNECERPGICGPGQCYNTIGNYTCICPVDYMQVNGGNNCMD
MRKSFCYRNFYSDNGTCDGELTFNMTKKMCCCSYNIGRAWNRPCEQCPVPSTNEFAILCG
SERPGYYIDIYTGQVIDIDECREIPGVCENGVCINMIGSFRCECAMGFLYNDKLLICEDI
DECQNGPVCQQNAGCLNMPGSYRCECKPGYRFTPTGQCLDRNECVENPGVCSPGQCIDTL
GSYRCICPNGFKATSDLAMCIDVDECERQPCGNGTCKNTVGSYNCLCYPGFQLSHNNDCI
DTDECSSQRGLCRNGNCINTLGSFVCVCRDGYELSADGRICVDVNECAVNPRTCGPGTCQ
NLDGSYRCICPLGYYIQDETCEDIDECSQTPDICLFGTCSNTEGSFTCVCPAGFQLSSSG
RRCVDVRVNYCYTKFESGRCLAPKPLNTTKGDCCCSAMPGQGWGDPCEICPGKNEEAFTS
LCHAVGQVFGPDDQPMDIDECTANPNICNNGQCINTDGSFRCECPFGFRLDTSGINCEDT
NECDLGNPCGNGTCTNVIGAFECACDEGFEPGPMMSCEDVNECSQNLLLCAFRCVNVIGS
YECKCPTGYVLREDKRMCRDQNECEDGLDDCESRGMRCKNLIGTYMCICNPGYTRAPNGE
GCIDLNECSAKPGICENGRCENTVGSYRCRCDQGFSANPTQTECIDNRQGLCFTEVLTTL
CQMQSSSRNSVTKSECCCDGGRGWGSNCELCPLPGTTHYKKMCPLGPGYTTDGKDIDECR
VMGNLCVNGQCVNSLGSYSCVCKTGYTTDITGTLCVDMDECVQAPKPCNFLCKNTEGSYL
CSCPRGYILQEDGKSCRDLDECQSKQHNCQFLCVNTIGGFTCKCPPGFTQHHTACIDNNE
CGSDPALCGSNGVCQNSPGSFNCECTRGFSMDPNGQSCEDMDECDGNHRCQHGCQNLVGG
YRCSCPQGYLQHYQWNQCVDENECQNTQICGGASCHNTLGSFRCLCPTGFNYGDQGGCSD
INECSSSSNPCNYGCSNTDGGYLCGCPPGYYRAGQGHCVSGVGFGSGVSLGQGGGGGGGG
GGGGGGGAAEVGDNDLSPEACYECKINGYPKKGRKRRDTNSTLEQPLDNAQHQETVSLES
VDIEDTLLFNLNMSGLSSRDHILEFTPALSTLNNHVRYSIDYGNELGYFKINQREGLSYL
HLSKRKSLPPGAYFLQISSVAVYRKKELAALEDSNDKDYLTGQLGDTLTMRVQIVLH
NT seq
8814 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcgggggcggctggtgaggctggcggtgggtctggtcgcggtcctttcgctgtgg
acggagcctggcggggctgaggctgagcaggctgggggaaccggaggagaagctagactt
accgaaggcgagctggtgtctttgccgttattaactgtagacagcgagccggccaggcag
actccgacccaacccagagccagccgggccaagcggaggggaggagggacagacgtcctc
aaagggcccaatgtctgtggctctcgtttcaactcctactgctgtccaggatggaagact
ctgaccgggggcaaccagtgcatcgtccctatctgtcggagctcgtgtggagacgggttc
tgctccagacccaacatgtgtacctgtcccaccggatccatctctccttcttgtggatcc
atgtcagtccaaaactgtaacatccgctgtatgaacggtgggagctgtgctgatgaccac
tgccagtgtcagaaaggatacgtgggaaaccactgtggtcaaccggtgtgtgagacaggt
tgtcagaatggaggacggtgtgtggctcctaaccgctgtgtttgtacctacggcttcacg
ggggcacagtgtgagagagactaccgtacagggccgtgctttgcgtctgtgagtaaccag
atgtgccagggccagctgacgggcatcgtgtgtactaagacgctgtgctgtgccaccgtg
gggagggcatggggacacccctgtgagatgtgccccgcccagcctcacccctgcaggaga
ggatttatacccaaccaccgtactggagcttgtcaagatgtggatgagtgccaggccatc
ccaggtctgtgtcagggtgggaactgtatcaacactgtgggatccttccagtgtaactgt
cctgctggacacaagttcaatgagatcacacagaaatgtgaagatctagatgagtgttct
agcatcccaggtctgtgtagtggaggagagtgttccaacacggtgggcagttacttctgc
aggtgttctcagggctactacactccagtggatggctccaggtgtatagatgcccggggt
gggtactgctatgccagcctgctgaacgggcgttgtgccaaccagaactcccagctcctg
accaagatacagtgctgctgtgacagtgggcgctgctggtcagacgggtccagtcctgag
ttgtgccccatgacagggactgatgagtaccagaagctgtgcacacaggtgcagaccagt
ccagggggggggcctctcccaggcgggggagggtctctcccaggcgggggagggactctc
ccaggtggaggagggcctctcccaggcgggggagggggaagaccagtagttccccaggtc
ccaggtatctacccaagaccaccctacccaggaccaccaatccctttccagcctctgcct
ggaccaggtcaataccctggacccatcatccagacccagaacatcagtaccagcattact
aacatgtgtgcggtattcaggaacctgtgtctgaacggccgctgtgtcccctcccctgga
agctaccgctgtgactgtaacatgggcttcagactagactcacgaggagagtgtatcgat
gatgatgagtgtgcgcggaacccgtgtgtgaatggagagtgtgtgaacacggctggatcc
tacttctgccagtgtcctgctggcttccagtctactgctaccaggaccgagtgcagagac
ctggatgagtgtgtggcaaacggtcgtatctgtaacaacggaaggtgtgtgaacactgag
gggagcttccactgtgtctgcaacgctggctttgagatctctactgacgggaagaactgt
caagacatggatgagtgtctgatcaggaacatgtgtttgaatgggatgtgcatcaacgac
gagggaagctttaaatgtatttgtaaacatggctatctgctcgacccaaccgggcgcttt
tgtgtcgacattgatgagtgtgagactccagggatctgtatgaacggccactgtgtgaat
acggaggggtccttcaggtgtgagtgtatggctggtctggccgtgggtctggatggccgc
gtctgtgtcgacacacatatgcgcagcacttgttatggaggatacaagcggggacagtgt
gtgaagccattcttcggagccgttaccaagtcagaatgctgctgtgccagtgtggagtac
gcctttggagagtcctgccaaccatgcccaccccaaaactcagctgagttcctggccctg
tgtagtaatggccccggcaccaccagcgatggcagagatattaatgagtgtgctctggac
ccggacatctgtcagaacggtgtgtgtgagaacatgctgaggacctataagtgtaactgt
aacatgggctttgaggtggacaccactggaaaacactgtgttgacatagatgagtgtgca
gtgaacaggttactgtgtgacaacggcctgtgcaggaacactccaggtagtttcacctgc
cactgtcccaccggcttcctgttccacgctgagacggatgtctgtgaagacattgatgag
tgtgagtcgaagccgtgtgtgaacggggactgtaagaacagcccggggtcctacgtgtgt
ctctgctcagcaggcagcacgctggacgcctctggaacacagtgtatagagaccagtaaa
ggcacatgttggctgaaggtgattaacggacgctgtgagatcaacatcaacggagccact
ctgaaatcccactgctgttccacactgggagaggcctggggaagtccctgtgccaagtgt
gaaccagatcatttctgcactaagggttatgctagagtcagagggaccatctgtgaagat
gttaatgagtgtgaggtgtttccgggggtgtgtatcaatgggaagtgtgtgaacaccgtg
ggttccttcatctgccagtgtccctctgggatgaccgtcgacgccaccggacgaacatgt
atagacctgcgtacagagcagtgttatctgagccacgaggatgagcgttgtggagcccct
atccagggtcgtcaccgtgtggacgcgtgctgctgctcggtgggtgtggcctggggcccg
gaatgtgacgagtgtccggagaaaggctctcaggagtacagccagctctgtcccagggga
cccggcttcgcaaacagaggagacttcattaatggacggcccttcctcaaagatataaac
gagtgtaagatgatccacagcttgtgctccaatgggaagtgtaggaacaccatcggtagt
ttccgttgtcgctgtgacaacggcttcgctctggactctgatgagaggaactgtacagac
atcgacgaatgccgtatctctccagacctgtgtggtcagggcacgtgtgtgaacacaggt
gggaacttcgagtgcgaatgttttgaaggttacgagagcggcttcatgatgatgaaaaac
tgcatggacattgatgagtgtgagcggaaccctctgctgtgtcgcggtggtgagtgtgtg
aacaacgagggcagcttccagtgtttgtgtcccgacggacacgagattgcccccgacgga
tccgcctgtctcgatattaatgagtgtgaactgagtgagaagctgtgtcggaacggtcag
tgtgtgaatatgattggacgttaccagtgttcctgtgatactggatataaatccacggag
gacagactggcctgtgtcgacattgatgagtgtacgatccagaatggaggttgtgagaca
ttctgtaccaactcagaggggagctatgagtgcagctgtcgctctggatacgccctgatg
ccagacctcaggacctgcactgacattgatgagtgtgaggacagtccagacatctgtgac
ggaggccagtgtaccaacatcccaggagagtaccagtgtctctgcttcgatggattcatg
tcttctgaagatatgaagacctgtctggatgtggatgagtgtgagctgaaccctaacatc
tgtctgagtgggaattgtgagaacagcaagggatccttcatctgccattgtgataagggc
tactccgtacgcaagggaactaccggctgcacagatattaatgagtgtgagattggggcc
cataattgtgacagacatgcctcatgtaccaacacggctggtagcttcaagtgtagctgt
gctccgggatggattggagacgggatcaaatgcacagacctggatgagtgttccaacggg
acccacatgtgcagcaacaacgcagactgtctgaacaccatgggatcataccgctgccac
tgcaaggacggattctctggggacggattctactgctcagacagcgatgagtgtgcagat
aacgtgaacctttgtgagagcggtaactgcctgaatgttcctggaggctaccgttgtgaa
tgtgacatgggtttcatcccaaccccggacggaaaggcctgcgaggacatagacgagtgt
acctttgccgatatctgtgtgaatggaaggtgtcagaacattccggggctgttcaggtgt
cagtgtagcatcggctacgagctggacaggagcggaggcaactgcactgacattaatgag
tgtgctgacccgaccacctgtatcagtggactgtgtgtcaacaccccaggtagctacatc
tgtaactgtcctcaagacttcgaactcaaccccacccgcgtgggctgtgtagacactcgt
tctggtgactgctatctggacgtgcggatgcggggggatgcgtctgagagtttggtctgt
tccaatgagataggtgtggcggtgtccaaagcctcatgctgctgttctctagggcaggcc
tggggaacaccctgcgaatcctgcccccctctcaactcctcggagtacaagacgttgtgt
ccaggaggagagggattcagacctaaccccatcactgttatactggaagacatcaatgag
tgccaggagctgccaggcctgtgtcaaggaggaaactgcatcaacacctttggtagcttc
cagtgtgaatgtcccaaaggcttccaactcaacgaggagaacagagtctgtgaagatgtc
aatgagtgtgagcgtccaggtatctgtggaccaggccagtgttacaacaccataggaaac
tacacctgtatctgccctgtggactacatgcaggtcaatggaggaaacaactgtatggac
atgaggaagagtttctgctacaggaacttctactctgacaacgggacgtgtgacggagag
ttgaccttcaacatgaccaagaagatgtgctgctgctcctacaacattggacgggcctgg
aacagaccctgtgaacagtgtcctgtacccagcaccaatgagtttgccattctgtgtgga
agtgagagaccaggatactacattgatatctacacaggacaggtcattgacattgatgag
tgcagggaaatcccaggtgtgtgtgagaacggcgtgtgtatcaacatgattggcagcttc
aggtgtgagtgtgcaatgggcttcctctacaatgacaagctgctcatctgtgaagacatt
gatgagtgtcagaatgggccagtgtgccagcagaatgcaggctgtctcaacatgcctggt
agctaccgctgtgaatgtaaacctggataccgcttcacccccactggacagtgtctggat
cgcaatgagtgtgtggagaacccaggagtgtgtagcccaggccagtgtattgatacgttg
ggaagctatcgctgtatctgccccaatggtttcaaggctacatcagacctggccatgtgt
atagatgtggatgagtgtgagagacagccatgtggaaacgggacctgtaagaacacagtg
ggatcctataactgcctgtgttacccaggctttcagctctcacacaacaatgactgcata
gatacggatgagtgttcgagccagagagggctgtgtaggaacgggaactgtattaacacc
ctgggctccttcgtgtgtgtgtgtcgcgatggctacgaactcagcgccgacggaagaatt
tgtgttgacgtcaatgagtgtgccgtgaaccctaggacttgtggtccaggcacctgtcag
aatctggacggttcctacaggtgtatctgcccacttggctactatatacaggacgagacc
tgtgaagatattgatgagtgttctcagaccccagacatctgtctgtttgggacctgctcc
aacactgagggcagcttcacctgtgtgtgtcctgccggctttcagctgtcctcgtcagga
cgcagatgcgtggatgtccgtgtgaactactgttatactaagtttgagagtggtcgctgc
ctggcccctaagcctctgaacaccactaaaggggactgctgctgtagtgccatgcctggt
cagggctggggagacccctgtgagatctgcccaggcaagaatgaggaggcatttacatct
ctctgccatgcggttggacaggtgtttggccctgatgaccagcccatggacattgatgag
tgcaccgccaaccccaacatctgcaacaacggtcagtgtatcaacacggacgggtcgttc
cgatgtgagtgtccctttggcttccgactcgacacctcagggatcaactgtgaagatact
aatgagtgtgacctggggaacccgtgtggaaatggaacgtgcactaacgtgattggagcg
tttgagtgtgcatgtgacgaaggcttcgaacccggacccatgatgtcttgtgaagatgtg
aatgagtgttcccagaatcttttgctgtgtgcgttccgctgcgtgaacgtgattggttcc
tacgagtgtaaatgtccaacaggctacgtgctgcgagaggacaagaggatgtgcagagac
cagaatgagtgtgaggatgggctggatgactgtgagagcagagggatgcgctgtaagaac
ctcatcgggacctacatgtgtatctgtaaccctggttacacacgggcccctaacggagag
gggtgcatagatctgaacgaatgctctgctaagccaggtatctgtgagaacggtcgttgt
gagaacacggttggaagctatcgctgcaggtgtgaccaaggcttcagcgccaaccctaca
cagactgaatgtatagataaccgccagggactgtgtttcacggaggtgttgactacactg
tgccagatgcagtccagtagcaggaacagtgtgactaagtctgagtgttgctgtgatgga
ggacgaggctggggttctaactgtgagctgtgtcctctacctgggaccacacactacaag
aagatgtgtccactggggcccggatacacaacagacggcaaagacatagatgagtgtcgt
gtgatggggaacctgtgtgtgaacggacagtgtgtcaacagcctgggctcctacagctgt
gtgtgtaaaactgggtacaccacagatatcactggcaccctgtgtgtggatatggatgag
tgtgtgcaggctcctaagccgtgtaacttcctctgtaagaacacagagggaagctacctc
tgctcctgtcccagaggatacatcctgcaggaggacggcaagagctgccgagatctggat
gagtgtcagagcaaacagcacaactgtcagttcctgtgtgtgaacaccattggaggattc
acctgcaaatgtcctccaggcttcacccagcaccatactgcctgcatagacaataatgaa
tgtgggtcggaccctgctctgtgtggctctaatggtgtgtgtcagaacagcccaggcagc
ttcaactgcgagtgtactagaggattctcaatggaccccaatggacagagctgtgaagat
atggatgagtgtgatggtaaccaccgttgtcaacatggctgtcagaacctggtgggaggg
taccggtgtagctgtcctcagggatacctacaacactatcaatggaaccagtgtgtcgat
gagaacgagtgccagaacactcagatctgtgggggagcgtcgtgccataacaccctgggg
agcttccgttgcctctgtcccactgggttcaactatggagaccagggggggtgcagtgac
atcaacgagtgctcctcctcctctaatccatgtaactacggctgttccaacacagacgga
gggtatctctgtggctgtccacctggatactaccgtgctggacaggggcactgtgtgtca
ggcgtgggctttggtagtggtgtgagtctgggccagggaggaggaggaggaggaggagga
ggaggaggaggaggaggaggggcagcagaggtgggtgacaacgatctgtctcctgaggcc
tgctacgagtgtaagatcaacggttaccccaagaaggggcgcaaacgccgcgacaccaac
tcaacgctggagcaacctctggacaatgcacagcatcaggagacagtgagtctggagagt
gtggacattgaggacaccctgctgttcaacctgaacatgtctggcctgtccagccgagac
cacatcctggagttcaccccggccctgtccacgctcaacaaccacgtgcgctactccatc
gactacggcaacgaactgggctacttcaagatcaaccagagggaggggcttagctacctg
cacctgtccaagaggaagtccctcccccctggagcctacttcctgcagatcagtagcgtg
gccgtgtacaggaagaaggagctggcagcgctggaggacagcaacgataaagactacctc
acaggccagctgggagacacactcaccatgagggtgcagatagtcctgcattaa
DBGET
integrated database retrieval system
