Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139403880
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Entry
139403880 CDS
T10872
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010
MAPK signaling pathway
ocla04120
Ubiquitin mediated proteolysis
ocla04140
Autophagy - animal
ocla04144
Endocytosis
ocla04620
Toll-like receptor signaling pathway
ocla04621
NOD-like receptor signaling pathway
ocla04622
RIG-I-like receptor signaling pathway
ocla05132
Salmonella infection
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139403880
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
139403880
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139403880
04140 Autophagy - animal
139403880
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
139403880
04621 NOD-like receptor signaling pathway
139403880
04622 RIG-I-like receptor signaling pathway
139403880
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139403880
09171 Infectious disease: bacterial
05132 Salmonella infection
139403880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139403880
04121 Ubiquitin system [BR:
ocla04121
]
139403880
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139403880
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
139403880
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
139403880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
DM
Sina_ZnF
zf-RING_5
U-box
TRAF3_RING
zf-TRAF_2
RING_XB3-XBAT31
zf-RING_11
zf-rbx1
Phage_GP20
Motif
Other DBs
NCBI-GeneID:
139403880
NCBI-ProteinID:
XP_071003163
LinkDB
All DBs
Position
Unknown
AA seq
551 aa
AA seq
DB search
MSCFESDKSSLENDEAYCGGAAASQLSNCALAMLEKEGSDSALSPTESTPTSLQGGAPLQ
GYDVEFDPPLESKYECPICLMALRAAVQTPCGHRFCRSCIEKSIRDTGQRCPVDNEVLRE
DQLFPDNFAKREILSLTVRCTNVGCTDKMELRRLDGHVTKCEFATVPCPLCQDAVWKSQL
EMHQSQHCQRRPVSCPDCVESFVYEDSKIHESLCPFANVVCQYCGMELIRDQLESHYDTD
CPKAPIACTFSTFGCREMMQRNDLAQHMQEFTQMHMRCMAEYLHRHSLTGYTQPPSSEDR
GAAAAELGAHPGASSSGAPCQCCGELQTMRETTQQLEGRLVRQDHQLRELSIQAGLVAEL
RRKVTSLEENLKELEAKQCQGVYVWPLEGFSGYLRTQAAGQPVVVHSPGFYTGRPGYKLC
LRLHLQTASAQRCSNYISLFVHTMQGEFDGQLSWPFQGTIRLAVLDQGPEGQHHVEVMET
KPDLQAFQRPTIQRNPKGFGYVTFLHLMELQRRGFVHDDTLLVRCEVTPRFDTALRREGA
AMQPRGPEASL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgctttgagagtgataagagcagcctggagaatgatgaagcgtattgtggtggg
gcggccgcgtcacagctgtccaactgtgcgctggccatgctggagaaagagggcagcgac
tctgcgctgagccccacggagagtacccccaccagcctacagggcggcgccccactgcaa
ggctacgacgtggagttcgaccctccgctggagagcaagtacgagtgccccatctgcctc
atggccctgagggcagccgtgcagacgccatgcggccatcgcttctgccgcagctgcatc
gagaagtccatccgtgatacagggcagaggtgtccagtggataacgaggtactacgggaa
gaccagctgttcccagataactttgccaagcgagagatcctctccctaacggtgcgctgc
accaacgtaggctgcactgacaaaatggagcttcgccgcctggatggccatgttacgaaa
tgtgagtttgccaccgtgccttgtccgctgtgccaggacgcggtgtggaagagccagctg
gagatgcaccaaagccaacactgccagcggagacctgtgtcctgtcccgactgtgtagag
agctttgtttacgaggacagcaagattcatgagtcgctgtgtccctttgccaacgtggtg
tgtcagtactgcggtatggagctcatcagagaccagttggaatctcactatgacacagac
tgtccgaaggctccgattgcctgtaccttcagcacttttggatgtcgagagatgatgcag
cgcaatgacctggcgcagcacatgcaggagttcactcagatgcacatgcgctgcatggct
gagtacctgcacaggcacagccttaccgggtacacccagccaccttcttctgaggaccga
ggggctgccgccgcagagctgggggcacacccaggagctagcagcagtggcgccccctgc
cagtgctgcggggaactgcagaccatgcgggagaccacccagcagctggagggccgtcta
gtgcggcaggaccaccagctacgtgagctgagcattcaggcggggctggtggcggagctc
cgtcgtaaggtcacctcgctggaggagaacctaaaggagctggaggccaagcagtgccag
ggtgtgtacgtgtggcccttggagggcttctcgggctacctacgtacccaggctgccgga
cagcctgttgtggtgcacagcccgggcttctacacgggccggccgggctacaagctgtgt
ctgcgcctccacctccaaacggcctcggcacagcgctgctccaactacatctcactgttt
gttcacaccatgcagggggaatttgatggccagctgtcgtggcccttccaaggcaccatc
cggctggccgtgctggaccaggggcctgagggccagcaccatgtggaggtgatggagacc
aagcccgacctgcaggccttccagagacccaccatccagaggaaccccaagggctttggc
tacgtcacctttctgcacttgatggagctacagcggcgggggtttgtgcacgacgacacg
ctgctggtgcgctgcgaggtgacgccgcgcttcgacaccgccctgaggcgcgagggggcg
gccatgcagcccagagggcccgaggcctcgctgtga
DBGET
integrated database retrieval system
