Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139405761
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Entry
139405761 CDS
T10872
Name
(RefSeq) nuclear pore membrane glycoprotein 210-like
KO
K14314
nuclear pore complex protein Nup210
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139405761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139405761
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139405761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_NUP210_2nd
Ig_NUP210_15th
Ig_NUP210_7th
Ig_NUP210_3rd
Ig_NUP210_1st
Ig_NUP210_4th
Ig_NUP210_9th
Ig_NUP210_6th
Big_2
NUP210_Ig
Motif
Other DBs
NCBI-GeneID:
139405761
NCBI-ProteinID:
XP_071004287
LinkDB
All DBs
Position
3:13545591..13598898
Genome browser
AA seq
1866 aa
AA seq
DB search
MAVLNSKVLCKLLIFSVTIIALSQSTRLNVPKLLLPRSNHNHVNFTLTAEKGCYKWVSSR
PQAVVVWPLSPSIPPSILPPSACSHQVLVSARPQSAPLDTNRGASIIRGQDSVTGHTLRC
DVIVDQIKQIQVVTTTRQLFTEDPPLVLSVMALDSGGNTFSSLAGLQFEWRLVKDSETAE
IVRFVRFSEAGYSPPHHILSLEEAGQKGDSVLLEGVRSGVVRVRASLSHPDYKWVEPASV
SLTVTDRLYLSPSHDAYLLLGSTLSFRVWKSVHDTETEVLLGEGEYELSVERDPNNDDDV
ITVDQDTGTVTARGLGRTTLSITHPSLPENSASHLPRCSVFVVEPSYLTLGVEEEDRWVL
ESGRQYQVTVRVHDQEGHTAHLAQNVVMTVDFSDWLFYVLETSSNSSYHVLETRGAGHTT
IRAALFTVLTEDGRALPLIPPIRAEQEVEIYEPLTLQPRLLVFPWQPEGQLYQHHLQVEG
GSGAVSWSVSDSDVAVVTIKGEVMAGKRRGQVDIQASDARNPLHTATGQVYVLRPAGVDV
LAQRGDCRVGETITLPLAVWGVQEETQAQDPPQGSSGPQTLLEVTDCSLINLHVTTSPQG
VFTPLPGSVGPGSGFCGGLQLEAVGPGHTLITITVEMEHYNITSMATLAAHSPLKALVSE
VVLSLGASFLVVFEGGPQPWPLVPARFHSDAQAEGEGLGVEALSLSEPRRAQQHTYRVTC
HALGEQWLVFSSGNSPGPLNQDPSVERSRVRVDCSAPGSLSLSLLPSFPPSIPPSSLSHP
CPEPHYPASLLSVSSSRDAVMQLAVFDHRGVQFDNFSSCSVNWLTSNYSLLSLPSHTHMG
LADTHTPSGHSILHGRQVLRAHDLTGTVTITVALTPAQDSWATPLTASVHLRLVEDVLWD
KRAITLYNHPDVTENLTLVQGSGHFLVRLQDRELANITYLENSNVVQVSPLRPGLSSILA
YDLCLTSADPAVTSISVSDITDFQIDFVDIVEVDHSALVRVRVLDSNRQPFLHRYLPLMH
LKLTPSSPILTVEPAGPLDSVSVGYRVSGHTVGVVSLHLSAVDNSGSVRTSSHKQLQVYP
RFTLQPRSLALTLGSVGQVKWEGGPHPQSSVGFSVSDSRIATVTETGLVRGVAVGMVKLR
GALQTVTQDTGALLTFAQDEVDVEVFNLTGVRIQGPLVKLSVGTEMPVYVMGSDNSQNPF
ALGSVESGLSFHWNLGKLGVLEIQTRHTQAGVTVSPAHSFSVLVRAWAAGRTSLRVTVQL
ANHTSASHQQLSDEIQILVYQEMQLAVGTSRSILMSPYSHYALQSNKDAICPVRYALCQC
VKGEGLVTVDSQGVLRAGPDTGSALLEVIAMETCGVNQTLLISVRVSPVWFVRLFSVSSL
YSVGGGGLPAFPLGWTIRVRALCYDNLGQQFNAHNTLTHITTNRDDLVQVTPDSDSHSFV
VQTVSGGLTVLGVQADPTNPSLSDYTPLPVLPAISAPPHTLRPGDTLCFNTPLTGPQGQP
GQWNVSSSRILQIDPKTGAALAKHSGTVVVYYRLEGGQQALREVKVDSPVIPELSPPDDR
FLTNWPDAADYTVPVELYTSPFNTAQCSLSQREAIEKSLQPEAELRCFLHFSAPYLQLNT
LQAVMVTTPHYDLDTGEYSCRVAVRPQSDSVLHLLSSLSVSVSLSASLRGQSPVPVLPLS
ALSLPLSGRLVQLPYLPAFHCPVSFLVLSALHPMAEFSVLGTKEVLSALQFHSDSTDVLL
SEPSQSDGHLVLSVYISTSWVKSQALPPPANITLSSHLTPQTHALTVYITVDSEVKIDLI
RLQSSWTQLLDFHLILVFAVFAVMATTATLYIVECSRTVRFSPWIRPSSPDTERIIRRRN
WLWSTR
NT seq
5601 nt
NT seq
+upstream
nt +downstream
nt
atggccgttttaaactctaaagtattatgtaaattattgatttttagtgtaactattatt
gctttgagtcagtcgacaaggctgaatgttcccaagttacttttgcccagatcaaatcat
aatcatgtcaacttcacgttgacagcagagaagggatgctataaatgggtgtcctcccga
ccccaggcagtcgttgtttggcccctctctccttccatccctccctccatcctccctcca
tcagcctgtagccatcaggttctagtgtccgcccggcctcagtccgctccactggacact
aaccgaggggccagcatcatacggggacaggactctgtgactggccataccctgcgctgt
gatgtcattgttgaccagatcaagcagattcaggttgtcacgacgacgcgtcaactgttc
accgaggacccacccctcgtgctctccgtcatggcactggactcaggaggcaacacattc
agtagtctggcaggtctacagtttgagtggaggctagtaaaggactcagagacagcagag
attgttaggtttgtgcgtttctcagaggcgggctactccccgccccatcacatcctgtcc
ctggaggaagcaggtcagaaaggggacagtgtgttgctggagggggtccgtagcggggtg
gtacgggtcagggcctccctctcgcacccagactacaagtgggtagagccggcctctgtg
agcctgaccgtgacagacagactctaccttagcccctcccatgatgcctacctgctgcta
ggctccaccctgtccttcagagtctggaaaagcgtgcatgacacagaaacggaggtgctg
ctgggtgagggagagtatgagttgtctgtagagagagacccaaataacgatgatgatgtc
atcactgtggaccaggacacagggaccgtcaccgcccgagggctaggccgcaccacgctg
tccatcacacaccccagcctaccagaaaactctgcttcccacctgcctcgctgttctgtg
tttgtggtggagccaagttacctgacgctaggtgtggaggaggaggacaggtgggtgttg
gagagtggtcgtcagtaccaggtgactgtacgagttcacgaccaggagggtcacacagca
cacctggcacagaatgtggtgatgaccgtggacttctctgattggctgttctatgtcctg
gagacttcctctaacagttcctaccatgtactggaaacacgaggggctgggcacactact
atacgagctgcactgttcactgtgctcactgaggatggccgagcgttgcccctgatacca
ccaatcagagcagagcaagaagtcgaaatctacgagcccctcaccctgcagccccgccta
ctagtgtttccttggcaacctgagggacagctctatcagcaccacttgcaggtagagggt
ggaagtggtgctgtgagctggtcggtgagtgacagtgatgttgccgtggtgacaataaaa
ggggaagtcatggcgggaaagagaaggggccaagtggatatccaggcatcagacgcacgc
aaccctctacacaccgctactggacaggtgtacgtgttgaggccagctggtgtggatgtc
ctggctcagagaggtgactgtagggtgggagagaccatcacccttcccctggctgtctgg
ggggtccaggaggagacccaggcccaggaccctccccagggaagctctggcccccagacc
ttgctggaggtgacagactgctctctcatcaacctccacgtcactacgtcaccacagggg
gtattcacccctctaccaggttctgtgggtccaggctcagggttctgtggaggactccag
ctggaagcagtgggaccaggccacaccctcatcactatcaccgtggaaatggaacactac
aacatcacttccatggcaacgctggccgcccacagtcccctcaaggccctggtttcagag
gtggtcttgtctttgggtgcgtctttccttgtcgtcttcgagggggggccacagccctgg
cccctggtccctgcacgtttccatagcgatgcccaggctgagggggaggggctgggcgtg
gaggctctcagcctatcagagcccaggagagcccagcagcacacctacagggtcacctgc
cacgccctgggggaacagtggctggtgttcagcagtgggaactccccaggtcctctgaac
caggatccctcagtagagcggagcagagtgagagtagactgcagcgccccgggttctctc
tctctctccctcctcccctcctttcctccctccatccctccatcctccctgtcccacccg
tgccctgagccccactatcctgccagtctgttgtctgtatccagtagcagggatgctgtg
atgcagttagcagtgtttgaccacaggggggtgcagtttgacaacttcagctcgtgctca
gtgaactggctgacctctaactactccctgctgtctctgccctcacacacacacatgggc
ctggcagacacacacacacccagcggccacagcatactgcacggtcgtcaggtgctccgc
gcccacgatctaacagggacagtcaccatcactgtggccctcacacctgcacaggactca
tgggcaacaccgctgactgcgtctgtgcatctgagactggtggaggacgtgctgtgggac
aaacgtgctataaccctctataaccaccctgacgtcactgagaacctgacattggttcag
ggttcaggacacttcttggttcgtcttcaggacagagagctggccaacatcacttacctg
gagaacagcaatgttgtacaggtgtctcccctgcggcccggcctctcctccatcctggcc
tatgatctgtgtttgacctctgctgaccctgccgtgacctccatctccgtctctgacatc
actgacttccagatagattttgttgacattgtggaggtggaccacagtgctctggttcgt
gtgcgtgttctagactctaacaggcaaccgttcctacatcgttaccttcctctgatgcac
ctcaaactgaccccctcctcacccatcctcactgtggagcctgcagggccgttggacagc
gtctccgtaggttaccgtgtgtcgggtcatacagtgggagtggtcagtcttcacctgtct
gcagtggacaacagtgggagtgtccggacttcctctcacaaacagctacaggtctacccc
agattcaccctgcagccacgaagtctggcactgacactgggcagcgtaggacaggtgaag
tgggagggcggcccccacccccagtccagtgtgggcttctctgtgagtgacagccgcatc
gccacggtgaccgagacaggattggtccgtggagtggcagtgggcatggtcaaactcaga
ggggcgttgcagaccgtcactcaggacaccggagctctgctcaccttcgcacaggatgag
gtggatgtggaggtgtttaacctgacaggggtcaggatccagggccctctggtcaaactg
tctgtgggcactgagatgccagtgtatgtgatgggcagtgacaatagtcagaaccccttt
gctctgggcagtgtagagtctggtctctccttccactggaatctgggcaagcttggagta
ctggagatacaaacccgacacactcaggcgggggtgactgtctctcctgcccatagtttc
tctgtgctggtgagggcatgggcagcgggcaggaccagtttgagagtgacagttcagctg
gccaatcacacgtcagcctcccaccagcagctttctgacgagatacagatactggtgtac
caggagatgcagctggctgtaggaacctccagatccatcctcatgtctccctactcacac
tacgcactacagagcaacaaagacgctatctgtcctgtgcggtacgccctgtgtcagtgt
gtgaaaggggagggtcttgtaacggtggacagccagggagttctgagggcggggcctgac
acaggatccgccctgctggaggtcatcgctatggagacctgtggggtcaaccagaccctg
ctcatcagcgtccgggtgtctccagtgtggtttgtcaggctattcagtgtgtccagcctg
tacagtgttggagggggaggcctgcctgcctttcccctgggttggaccatcagagtcagg
gctctctgctacgacaacctgggacaacagttcaacgcccataacaccctcacacacatt
accaccaacagggatgacttggtgcaggtgactccagactcagacagtcattcctttgtg
gtccagacagtgtctgggggtttgacagtcctaggggtgcaggcagaccccaccaacccc
tccctgagtgactacacccccctccctgtcctccccgccatctctgcccccccacacaca
ctcaggcccggagacacactctgcttcaacacccccctgacaggaccgcaaggccagcca
ggtcagtggaacgtgtcgtctagtcgtattctgcagattgacccaaagacgggagctgct
ctggcaaagcattctgggacggtagtggtctactacagactggaaggtggacagcaggcc
ctcagagaggtgaaggtggactctccagtcatcccagaactctctcctcctgatgatcgt
ttcctcaccaactggcctgacgcagctgactacacggttcctgtggaactatacacctcc
cccttcaacacagcccagtgttccctgtcccagagggaggccatagagaagagcctgcag
ccagaggcagagttacggtgtttcctgcatttcagcgccccctacctccagctcaacacg
ctgcaggctgtgatggtcaccacgcctcactatgacctcgacacaggtgaatacagctgc
agagtcgctgtccgtccccagtcagactccgtcctccacctcctctcctccctctctgtc
tccgtctctctctcagcctctctgcggggccagtcccccgtccctgtcctccctctctct
gctctgtcgctacctctctccggacgtttggtacagttgccgtacctgcctgcgttccac
tgcccagtgtctttcctggtgctatctgctctgcatcccatggcagagttctctgtgctg
ggcaccaaggaggtgctctctgccctacagttccactctgacagtactgacgtgctgcta
tctgagcccagtcaatcagacggacatctggtgttgtctgtatacatttccacttcctgg
gtcaaaagtcaggccctgccccctcctgccaacatcaccctctccagccacctgacccca
cagactcatgcccttacagtttacatcacggtggacagcgaggtgaagatagatctgatt
cgtctacaatcttcctggactcagctcctggacttccatctcatcctggtctttgctgtg
tttgcagttatggccactactgccaccttatacatagtggaatgcagcaggacggtgcgt
ttctctccctggatcagaccctcgtctccagacacagaaaggatcatccgcagacgcaac
tggctctggagcacacggtga
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