KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139405904
Entry
139405904         CDS       T10872                                 
Name
(RefSeq) tumor necrosis factor-like
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010  MAPK signaling pathway
ocla04060  Cytokine-cytokine receptor interaction
ocla04150  mTOR signaling pathway
ocla04210  Apoptosis
ocla04217  Necroptosis
ocla04350  TGF-beta signaling pathway
ocla04620  Toll-like receptor signaling pathway
ocla04621  NOD-like receptor signaling pathway
ocla04622  RIG-I-like receptor signaling pathway
ocla04625  C-type lectin receptor signaling pathway
ocla04920  Adipocytokine signaling pathway
ocla05132  Salmonella infection
ocla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    139405904
   04350 TGF-beta signaling pathway
    139405904
   04150 mTOR signaling pathway
    139405904
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    139405904
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    139405904
   04217 Necroptosis
    139405904
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    139405904
   04621 NOD-like receptor signaling pathway
    139405904
   04622 RIG-I-like receptor signaling pathway
    139405904
   04625 C-type lectin receptor signaling pathway
    139405904
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    139405904
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    139405904
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    139405904
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ocla04052]
    139405904
   00536 Glycosaminoglycan binding proteins [BR:ocla00536]
    139405904
Cytokines and neuropeptides [BR:ocla04052]
 Cytokines
  Tumor necrosis fators
   139405904
Glycosaminoglycan binding proteins [BR:ocla00536]
 Heparan sulfate / Heparin
  Cytokines
   139405904
SSDB
Motif
Pfam: TNF Mobilization_B
Other DBs
NCBI-GeneID: 139405904
NCBI-ProteinID: XP_071004450
LinkDB
Position
3:31041314..31042780
AA seq 255 aa
MEGYAMTPEDMERGLENSLVDSGPVYKTTVTAVAERKASRGWIWRLCGVLLIAALCAAAA
LLFAWCQHGRLGTMQDGMEPQLEIFIGAKDTHNTLKQIAGNAKAAIHLEGEYNPNLTADT
VQWRKDDGQAFSQGGFKLQGNQILIPHTGLFFVYSQASFRVKCNGPGERTTPLSHVIWRY
SDSIGDKGNLLSGVRSVCQHNYGNAESNIGEGWYNAVYLSAVFQLNEGDKLWTETNRLTD
LEPEQGKNFFGVFAL
NT seq 768 nt   +upstreamnt  +downstreamnt
atggaggggtatgcgatgacacctgaagacatggagaggggccttgaaaatagccttgtg
gacagtggccctgtgtacaagacaacagtgacagctgtcgctgagagaaaggcctccaga
ggttggatatggaggctgtgtggcgttctcttaatagcagctttatgtgcggcagcagcc
ctgctctttgcctggtgtcagcatggaagactgggaacgatgcaggacggaatggagcct
cagctggagatattcattggtgcaaaagatacccacaatacattgaagcagattgccggc
aatgcaaaagcagccatccatttagagggtgaatacaatcctaatcttaccgctgacaca
gtgcagtggagaaaggatgacggccaggccttttcccagggcgggttcaagctacaaggg
aaccaaatcctcatcccacacactgggctcttctttgtttacagccaggcttcttttagg
gtcaagtgcaacggcccgggcgagcgtaccactcctctgagtcacgttatttggcgctat
tcggactccatcggggataagggtaatctacttagcggggtaaggtcagtttgtcaacac
aactacggtaatgctgagtccaatattggcgaaggctggtataatgcagtttaccttagt
gcagtgtttcagctgaatgaaggggacaaactgtggactgagaccaatcgactgaccgac
ttggagccagagcagggcaagaacttctttggtgtgtttgcactatga

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