Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407397
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Entry
139407397 CDS
T10872
Name
(RefSeq) thrombospondin-1-like isoform X1
KO
K16857
thrombospondin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04115
p53 signaling pathway
ocla04145
Phagosome
ocla04148
Efferocytosis
ocla04350
TGF-beta signaling pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
139407397
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139407397
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139407397
04148 Efferocytosis
139407397
09143 Cell growth and death
04115 p53 signaling pathway
139407397
09144 Cellular community - eukaryotes
04510 Focal adhesion
139407397
09142 Cell motility
04820 Cytoskeleton in muscle cells
139407397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139407397
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139407397
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Opsonins
139407397
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139407397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
TSP1_ADAMTS
EGF_3
Laminin_G_3
EGF
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
139407397
NCBI-ProteinID:
XP_071007245
LinkDB
All DBs
Position
4:86099068..86119614
Genome browser
AA seq
1174 aa
AA seq
DB search
MKLTGIFLLLMLLTCESVRVAENRDDNSVYDLFELVQVSKKNHGVTLVKGDDPYSPAYKI
LNPDLIPELPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS
NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA
PIQSILTQETPATARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVLTDEI
VLIDDTINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK
VTDENKFLMNRVGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLEGKDCQGEG
RQTEKCTKSPCPINGNWGPWSLWDTCSATCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT
QQCNKNACPIDGCLSNPCFPGTKCTSFPDGTWRCGKCPSAYSGDGIKCKDIDECKEVPDA
CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHECN
KNARCNYLGQFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC
PNLPNSGQEDYDKDGVGDACDNDDDNDGIADDRDNCPFVYNPRQYDYDRDDIGDRCDNCP
YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPL
EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDEKDNCRLAFNPDQIDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGNTPGQVKTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSI
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRGKEQ
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacaggaatatttctgctgttgatgcttttgacctgcgagagcgtacgggtt
gcagagaaccgagacgacaatagcgtgtacgacctgttcgagctggtccaagtctccaag
aagaaccacggagtgaccctagtgaagggagacgacccatacagtcccgcctacaagatc
ctcaacccggacctgatccccgagctccccgagagctccttcagggacctcatcgattcc
atccatgccgagaggggcttcctcctcctgcttaacttcaagcagtttaagcggaccagg
ggctccctcttgaccgtggagaagcgggacggatcaggagccgtgttcgagattgtctcg
aatggaaaagcgaacaccctggatgtggttttctccaccgttaataaacaacaggtggtc
tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag
gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactggacgct
cccatccagagcatcctcactcaggagactcccgccacagcgcgcctcaggatcgggaag
ggagcggtgaaggaccggttcatgggggtgctccaaaacgtgcgcttcgtctttggaacc
actttggacgcgattctgcgcaacaagggatgtcaaaactctgttcttactgatgagatc
gtccttatcgacgacaccatcaatgggtccagccctgccattaggacggactacactggc
cacaaaactaaagacctgcagatgatctgtgggttctcctgcgaggacctggctggcatg
ttcaaggaattgaaggggctgggagtggtggtgaaggagctgtccaatgagctacgcaaa
gtgacggacgagaacaagtttttgatgaacagagttgggatccacagtggagtctgtctg
cacaacggcatcgtccacaagaacaaggccgagtggaccgttgacgactgtaccgagtgc
acatgtcaaaactctgccaccgtgtgccgtaagatctcctgccccctgatcccgtgtgcc
aacgcaaccgtgcccgatggagagtgctgcccgcgctgtggaacaccgagtgactatgcg
gaggatggatggtccctgtggtctgaatggacccactgttccgtgtcttgtgggcgggga
attcagcagagaggccgctcctgcgaccgcatcaacaacaactgcgagggaacctcggtc
caaaccagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggtgcctgg
agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt
atccgcctctgcaactcccccacaccccagctggaaggcaaggactgccaaggagaggga
agacagactgagaagtgcaccaagtcaccctgcccaatcaacggtaactggggaccctgg
tcgctatgggatacctgctctgccacctgtgggggaggagctcagacacgtaaacgcctc
tgcaacgaccccgcccctaaatatggtggtaaggagtgccagggtgactccaaggccact
cagcagtgcaacaagaacgcctgtcccatcgatggctgtctgtccaacccttgcttccct
gggaccaagtgcaccagcttccctgatggaacatggaggtgtggaaaatgcccctctgct
tactctggtgatggcatcaagtgcaaggacattgatgagtgcaaagaggttcctgacgct
tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg
ccctgtcctgcacgctactctggacctcagcccttcggcaggggagtggaggaggccacc
gccaagaaacaggtgtgtacaccacgtaacccctgcctggatgggagccacgaatgcaac
aagaacgcccgctgtaactacctgggacaatttgccgaccccatgtaccgttgtgagtgt
aagcctggctatgctggaaatggacacatctgtggtgaggacacggacctggacggatgg
cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaaaaaggacaactgc
cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcttgt
gacaacgatgatgacaatgatggtattgctgacgacagggataactgtccgttcgtgtac
aaccccaggcaatacgactatgacagagatgatattggagatcgttgtgataactgtcct
tacaacagcaaccctgaccagaccgacacagacaacaacggggaaggagacgcctgctct
gtggacattgatggagatggcattctgaatgagaaagacaactgcccgtacgtctacaac
gtggaccagagagacaccgacctggacggtgtgggagacatgtgtgacaactgtcctctg
gaacacaaccctgaccaggttgactctgatgacgaccgtgtgggagataagtgtgacagc
aaccaggacatcgatgaagatggccaccagaacaacctggacaactgcccctacatcccc
aacgctaaccaggccgaccacgacaaagacggaaagggagatgcctgcgaccacgatgat
gacaatgacgggatcccagacgagaaagataactgcagactggccttcaaccctgaccag
atagactccgatggtgatggtcgaggagacgcttgcaaagatgactttgaccaagacaat
gtgcctgacatctacgacgtgtgtccggagaactttgacatcagcgagacggacttcagg
aagttccagatggttcccctggaccccaagggaacgtcccagatcgaccccaactgggtg
gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt
ggttttgatgagttcaactctgtggacttcagtggaaccttcttcatcaacacagagcga
gatgatgactacgccggctttgtgttcggctaccagtccagctccaggttctacgtggtg
atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac
tcaggactgtccatcaaggtggtcaactccactactggacctggtgagcacctcaggaac
gctctctggcacacgggtaacaccccaggacaggtgaagactctttggcacgaccctaag
aacattggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca
ggacacatcagagtggtcatgtacgaggggaagaagatcatggctgattctgggagcata
tatgacaagacgtatgcaggcggaagactaggcctctttgtcttctcgcaagagatggta
tacttctcagacctcaagtatgaatgcagaggtaaggaacaatga
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