Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408560
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Entry
139408560 CDS
T10872
Name
(RefSeq) tumor necrosis factor receptor superfamily, member a
KO
K04722
tumor necrosis factor receptor superfamily member 10A/B
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060
Cytokine-cytokine receptor interaction
ocla04115
p53 signaling pathway
ocla04210
Apoptosis
ocla04217
Necroptosis
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
139408560
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
139408560
04217 Necroptosis
139408560
04115 p53 signaling pathway
139408560
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139408560
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
ocla04050
]
139408560
04090 CD molecules [BR:
ocla04090
]
139408560
Cytokine receptors [BR:
ocla04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
139408560
CD molecules [BR:
ocla04090
]
Proteins
139408560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNFR_c6
Death
DUF6721
Motif
Other DBs
NCBI-GeneID:
139408560
NCBI-ProteinID:
XP_071008710
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All DBs
Position
5:complement(24057573..24094490)
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AA seq
460 aa
AA seq
DB search
MMIFDLTFMKCSVVVFLLCSGLACCGAELRGVLSAQWSGDDRNRTQRHKTCVENQQYRHQ
DLCCLNCQAGTFVGGACDRDMEQGRCLPCDHGHTYTEHSNGMNHCLPCTHCRKDQSKTVP
CTSTTDTQCQCRAGTFCVPEQACEVCKRCAKCKVGEGEVKKCTPISNTLCRKLDVSPTLH
LPTLPTPTPSSPRTIATPLVILLLLFLLSIGIGVWLWIKKPCTFQPVCLSGSDSRCDSNE
IVKIPIDESGPTAEERQNSQNAGLEEEEAEEVRPESRPLLQETQGRLIKASPPLSLGEDE
DRGLGDSLPNTTSSSQTSLSALPTAGAASSSSSPQHSPSTQRLQPTAGDDPLQKRLVPLL
GDETSLKKSFDLFDECLDVRIHNKFFRYIGVNDNHIKMAERALPGDKVYDLLKNWMQKEG
LKADINALLQALLSLDQRRSAESIALAAIKRGYYKHADTP
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcttcgatctgacgttcatgaaatgttcggtggtggtgttcttactgtgctca
gggctggcctgctgtggggcggagctcaggggcgtgttgtcggcccagtggtccggcgat
gacaggaaccgaacgcagcgacacaaaacctgtgtggagaaccagcagtaccgccatcag
gacctctgctgcctcaactgccaggccggtacgttcgtgggcggggcgtgtgaccgggac
atggagcaggggagatgcttgccctgtgatcacggccacacctacacagaacactccaac
gggatgaaccactgcctgccctgcacgcactgccgcaaggatcagagcaagacggtacct
tgtaccagtaccacagacacccagtgccagtgtcgtgcgggcaccttctgtgtgccagag
caggcctgtgaggtctgcaagagatgtgccaagtgtaaagtgggggagggggaggtgaag
aaatgcacccccatttccaacactttgtgtaggaaactggacgtctcacctaccctccac
cttcctaccctccccacccccacccccagctcaccaaggaccatagctacgccattggta
attctgctcctgctcttcctcctctccattgggattggtgtgtggctttggatcaagaag
ccatgtacatttcagccagtttgtctttcaggttcagacagtcgctgtgactccaatgag
atcgtgaagattcccatcgatgagagtggacccacagcagaggagagacaaaacagccag
aacgccggcctggaggaggaagaagcagaggaggtccgtcccgagtcacgtcccttgctg
caggagacccagggtaggctgatcaaggcctcccctcccctgagcctgggggaggacgag
gaccgtggcctgggtgacagcctgcccaacaccaccagctcctcccagacaagtttgtcg
gccttgcccaccgccggggcagcctcgtcgagcagctctccccaacacagcccctccacc
cagagactgcagcccacagccggggatgatcctctacagaagagattggtgcccctgcta
ggagatgagacatccctgaagaagagcttcgacctcttcgacgagtgcctggatgtgcgg
atccacaacaagttcttccgctacattggtgtcaatgacaaccacatcaagatggcagag
agagcccttcctggcgacaaggtgtacgacctgttgaagaactggatgcagaaggagggt
ctgaaagcagacatcaatgcactgctccaggcccttctcagcctggaccagaggcgctcc
gctgagagcatcgccttagctgccatcaagaggggctactacaaacacgcagacacgcct
tga
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