KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139408736
Entry
139408736         CDS       T10872                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    139408736
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocla03000]
    139408736
   04121 Ubiquitin system [BR:ocla04121]
    139408736
   03036 Chromosome and associated proteins [BR:ocla03036]
    139408736
Enzymes [BR:ocla01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     139408736
Transcription factors [BR:ocla03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    139408736
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     139408736
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    139408736
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     139408736
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box JmjC Cupin_8 LRR_At1g61320_AtMIF1 PsbP
Other DBs
NCBI-GeneID: 139408736
NCBI-ProteinID: XP_071009092
LinkDB
Position
5:complement(36375059..36430300)
AA seq 1413 aa
MEASAESGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSDSYNTHFVQLMDGKD
FTYEYVQREALQTPLIFKAKDGLGIRMPDPEFTVSEIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPLKLKRRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVHSKFRYPFYHEMCWYVLERYVHCLTKRSHLTPEFRREPLLI
DLETKLSTESPSSDSRSQDMDEEDSCETQQGRDEQGDRSAFDDPCSPDNRKGKSSGLRHL
KAALSNDSEDSCIPTSTQPPEFPKTPFGSPVSESPSKWTHLTEFELKGLKALVEKLEALP
ENKKGVPDGIKDPQALLEDMKVVLKEHEDDDPKMAATGVPVVFWPKKSAKCCAIKTPLPP
LQQQRPPNRPKPKMAASSPAAAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKD
MKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEDKFNRMLMECSICN
EIVHPLCLKVKDSGGVVNDELPNCWECPKCNHSGKTGKAVKQKRGPGFKYASNLPGSLLK
DSRLNRDIKEEPDPPSLPTSPTGTTATVATVKRKAERDDTPKTKAEESPPLKKRSPMLSL
GGLPRPRPEDNPLRKKRMLFDIKDEDEPPVVKKKKKPPKPDDLLIPKLLKTIKQEQVDED
DEHKDHEDEEEDRCTGDRVVTKGRRDEEEEDGDEEEEKDGGVEDSKDGTVKTMLSPLLRM
SRARESDQSCSSSPRAGPSSVGCDASEKTPGQLKARKRRRLPNKELSKELSKELNLEIQK
TEDCLANQNRRPLKREDSPANNIRRPLKTEDSLTNPNRRPPKTEDSPANHNRRPIKTEDS
LSNHNRRPLRTEDRLVNQNHRPMKTEPESDGEEPKPKRPLNNCTSDLGDWLHSRGRELNG
TPRQLSPLGWNRSPPITPICPRPPPCRSPPKCVQMERHVIRPPPISPPPDRLPLEDGQTH
MMHREVWMAVFGHLAHRDLCVCMRVCKTWNRWCCDKRLWTRINLNRCKSITPLMLSGIIR
RQPVALDLSWTNISKKQLSWLINRLPGLRMLLLSGCSWVAVSALCTASCPLLRTLDVQWV
EGLKDAQMRDLLSPPTDNRPGQLDNRSKLRNVVDLRLAGLDITDTSLRLLIRYTPQLTRL
DLSYCNHVTDQSVNILTAAGTTTRDSLTDINLSVCNRVTDQSLAYFKRCGSICHIDLRYC
KQVTKEGCERFVAEMSVSVQFGLVEEKLLQKLC
NT seq 4242 nt   +upstreamnt  +downstreamnt
atggaagcgagtgcagaatctggacgcaaactgcgctccatctgccggacaatgtatgac
gaaaacgaggacttctctgacgttgaagaaattgcaaatgtcaggggtttcaatctggag
gagaaacttgttagtgactcatacaacacacatttcgttcagttgatggatggcaaagat
ttcacttatgagtatgttcagagagaggcacttcagacccctctgattttcaaagccaaa
gatggactgggaatcagaatgccagacccggagttcaccgtcagtgagattaaaggtttg
gttggtagccgtcgtgccgttgatgtgatggatgtgagcacccagaaaggctctgagatg
agcatggcccagtttgtccgctactatgagacgcctgaggaagagagggacaaactcttc
aatgttatcagcctagagttcagccacaccaaactggagaacctcatcaagaggcccact
gtggtggatttagtggactgggtggacaacatgtggcccctaaaactgaaacgaagacaa
accgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccacattgatttcgggggcacgtctgtgtgg
tatcacgttttcaagggagggaaggtgttctggctggtgcctccgacgcctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagagtgacatcttcctgggagaccgt
gcagatggctgccagagggtggagctgaaacagggctacaccttcttcatcccctctggc
tggattcatgcagtctacacccctgaggacacgctggtgtttggaggcaacattctgcac
agctttaacattcccatgcaactctccatctatgagatagagaataggactaaggttcat
tccaagttccgctacccattctaccatgagatgtgctggtatgtcctggagaggtacgtg
cactgcctgaccaagcgctcccatctcactccggagttccgcagagagcctctgctaatc
gacttggaaactaagctgagcacagagagcccctcctctgactcccggagtcaggacatg
gacgaggaggactcctgcgagacgcagcagggacgggatgaacagggtgacaggtcagca
tttgatgatccctgctctcctgataacaggaagggtaaatccagcggccttcgacacctc
aaagctgccttgtccaatgattctgaggacagctgcatccccacctccacccagcctcca
gagttccccaaaaccccctttggctcgccagtctcagagtctccgagtaaatggactcat
ctgactgagtttgaactgaagggcctcaaggcccttgtggagaaactggaagccctccct
gaaaataagaagggtgttccagatggcatcaaggacccccaggccctgctggaggacatg
aaggttgtcttgaaggaacatgaagatgatgaccccaaaatggctgccactggagtacct
gtggtgttctggcccaagaagtctgccaagtgttgcgctataaagacacctctccctcca
cttcagcagcagcggcctcccaacagacccaaacccaaaatggcggcctcgtctcctgcg
gcggcggtcaagctgtcggccagccggagcacgtctggcgccaggaggagaaggacgcgt
tgtcggaagtgcgaggcgtgcctgaggacagagtgtggagaatgccacttctgtaaagac
atgaagaagttcggagggccaggtcgcatgaaacagtcctgcatcatgaggcagtgtata
gcgcctgtactgccccacacagcggtgtgtctggtgtgtggagaggcagggaaggaggac
acagtggaggaagaggaggacaagtttaaccgcatgctcatggagtgctccatctgcaat
gagatagtccatcctctctgcctcaaggtgaaagattctggtggagttgtaaatgacgag
ttgccaaactgctgggagtgtccaaaatgcaaccattcagggaagacagggaaagccgtc
aagcaaaaaagaggaccagggttcaagtacgcgtccaaccttcccgggtcgctgctgaag
gactcacgattgaaccgtgacatcaaggaagagcccgacccgcccagtctgccaacatca
cccactgggaccacggcaaccgtggccacagtgaagaggaaggcggagcgtgatgacacc
cccaaaacgaaagcagaggagtctcctcctctgaagaaacgttctcccatgctgtctctg
ggcgggctgccccgacccaggcctgaggacaaccctctgagaaagaagaggatgctgttc
gacatcaaagatgaggacgagcctcctgttgtcaagaaaaagaagaagcccccaaaacct
gatgaccttttgatccccaagctgttaaagaccatcaagcaagagcaagtagatgaggac
gacgaacacaaagaccatgaagatgaagaggaggacagatgcacaggggacagggttgta
actaaagggagaagagacgaggaggaagaggatggagatgaggaggaggagaaagatggt
ggtgtagaggacagtaaagacggtacagtaaagactatgctgagtccactgctacggatg
tctagagccagagagagtgaccagtcctgctccagctctccccgggcagggcccagcagt
gtagggtgcgatgcctcagagaagacacctggccagctgaaggcacgcaagcgccgccgc
ctccccaacaaagagctgagcaaggagctgagcaaagagctcaatctggagattcagaag
accgaggactgcctggccaatcagaaccgcagaccactgaagagggaggacagcccagcc
aataacatccgtcgacccttgaaaactgaggactccttgaccaatccgaaccgcagacca
ccaaaaacagaggactctcctgccaatcataaccgcaggccaattaagactgaggatagc
ctatccaatcacaaccgccggccattgaggaccgaggaccgcttagtcaatcagaaccac
aggccaatgaagacagagcctgagagcgacggggaggagcctaagcccaagcggccactc
aacaactgcaccagtgaccttggagactggctccactccagggggcgggaattaaacggg
acgccccgccagctctcgcccctggggtggaatcgcagccctccgatcacacccatttgc
ccacgcccccctccctgccgctcaccacccaagtgtgtccagatggagcgtcacgtgatc
cggccacctcccatcagccccccgccagacagactgcccctggaagacggacagacccac
atgatgcacagggaggtgtggatggccgtgttcgggcacctcgcacacagagacctttgt
gtctgcatgcgcgtctgcaaaacctggaacagatggtgctgtgataagaggctgtggacg
cggatcaatctgaaccgctgtaagtccatcactcccctcatgctgagtggcatcatccgc
agacagcctgtggctctggacctcagctggaccaacatctccaagaagcagctcagctgg
ctcatcaacaggctgccaggtctgcggatgctgctgctctcaggctgctcctgggtggct
gtgtctgccctctgcaccgccagctgcccgctgctgaggaccctagatgtccagtgggta
gaggggctcaaagacgcccagatgagggacctactctcaccccccacagacaacagacca
ggtcagctggacaacaggagtaagctgcggaatgtggtggacctgcgtctggccgggctg
gacatcacagacacctccctgcgcctcctcatccgctacacgccccagctgaccaggctg
gacttgagctactgcaaccacgtcactgaccagtcggtcaacatcctgaccgcggctggg
accaccaccagagactcgctcactgacatcaacctctctgtgtgcaacagagtcacggac
cagtcgctggcctacttcaagcgctgtggaagcatctgtcatattgacttgcgctactgc
aagcaggtgaccaaggagggctgtgagcggttcgttgctgagatgtcagtgagtgtacag
tttggacttgtagaggagaaactactgcagaaactctgctag

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