Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139409009
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Entry
139409009 CDS
T10872
Name
(RefSeq) FYVE and coiled-coil domain-containing protein 1-like isoform X1
KO
K21954
FYVE and coiled-coil domain-containing protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139409009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139409009
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
139409009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FYVE
RUN
GOLD_2
ATG16
Motif
Other DBs
NCBI-GeneID:
139409009
NCBI-ProteinID:
XP_071009723
LinkDB
All DBs
Position
5:complement(54488639..54533637)
Genome browser
AA seq
1517 aa
AA seq
DB search
MAAGEALGESQLRRIIRDLHDAVAELTKEYRENGEPITDDSPNLHKLSYKLEYLLQFDQK
EKTTFLGTRKDYWDYFSDCLSKIKGANDGIRFVKSIPELKTSLGKGRAFIRYSLVHQRLA
DTLQQCLMNQRVTSDWYYTRSPLLKSHLGVDIISHLYELNEVQFDVASSGHDLDSSWPTF
ARRTLGMPNSPGHMWKPPSRSSSINSLASTYSQQAHEFLGSPDNGPSMLSELNELLPSSV
EVGMLDELRLELDQSELKQRELLDRVQQMGEEGAELRRVVVELQRQLDVSLTAQEKQQGM
QGTLKDLEAREEALSCELAALRAGERAREIENRHLQEKLAAAEGKNVELMTKLDGVLDEK
GQQATSYFDSAQKIHELLDRLKEAERGKIEALAEGEDRRRQADRLADELRVKEVAEKKDE
AKLESLSKSIAEGNAKFAECAEEQRNAIDKLKLTLTLREKEVNNLQRQLQDLQCVLEEME
RQAEEARNRAEEEKEEIQESICSLKEALEVEQLYLKEQLKSREAELLSSIQRLQHLEVQS
HSLTTERDILSANLSKLESSIREQANKIEEYKTQCTNLMELNGKLLDTVKRNEELKKELA
ESRAALEGEVAALRVSDKHLRGQLDDAKVTVDEKDRKLREENRALDESLQRAAMAAAVSD
ASTKRLEQENQGLREEQATVRAALSSMQEELKSIHGQIGELEKSLGASRRSEASLQEQLK
DRKAQLENKEKSCAELQARVEALEARGRTLEKAKADAENACAKKTKLIERVTTEKQTVER
TQLQRSSAQAKESQEVAAKLTMVEGQLEVNMKEVSRFQAEVMDLRVQLKTSGEDRMRSQA
QLEVMEAQKDALRTLTEQLKAQTEALNQRHVAELLQCKEREEALSRERDQEAATRSESAA
AEATARGELATLKAQNERLAMENAEIREGLHRANTEMAELGMTICRLTAEREEAKEGWAG
EADRIGELEERTSGEVERLEACMAAMRQENTGLREELRMTENLPGAMLELQDKLEKAEGQ
VRSLQDTSLEEMEAVKFQMSSESMNHQNQIKSLKDELGKLRVQLPKEQEKVSSLETKIFE
IEGVNEEYSRLIGEKDAHVAKSEAAIRQSEGEIQRLRDSVTSAEEALLEVQAAREELKKK
LEQAEVDKHSHCLRTTAEIDDLYRTKSTLEERLIELIKDKDILWQKSDALEFEQKLRAEE
RWLQDKEATHCLGCQGHFTWWLRRHHCRLCGRIFCYYCSNNFVMTKHSGKKERCCRECYT
QHRAVVERFTEGELSPSDTQLPPPVIGPHSLPKPAPYKPTPRVTVSDPSAKTDDGAYDII
TEEDANGIYDSDSLSLTTGDSLEGEQDARTLGALEIGTGDTTPDDPEENVPTLQDAEITL
LKSGEVTLVVPVSIDDISQFGDGSRELFVKSSCYSVISIVVVDCSPTVSWMFSSEPKSIS
FGMVYRVTADVPVEQSKVLIPLTRCNSHKEAIQGQLKVRNPGLYTLIFDNSFSRFISKKV
LYHLTLEKPVIYDGRDF
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atggccgccggtgaggctttgggggagagccagcttcggaggattatcagagatctgcat
gatgctgttgctgagctcactaaagagtacagggagaatggggagccaatcacggatgat
agtcccaatctgcacaaattatcctacaaactggagtacctgctgcagtttgaccagaag
gagaagacaacatttcttggcaccagaaaagactactgggattatttcagcgactgtctg
tccaagatcaaaggcgccaacgatggtatccgctttgtcaaatccatcccagagctgaag
acatctctggggaagggcagggctttcattcgctactccctggtgcaccaacgactggcc
gacactctgcagcagtgtctgatgaaccaaagggtaaccagtgactggtactatactcgc
agccctttgctgaaatctcacctcggtgttgacatcataagtcacctgtatgagctcaac
gaggtccagtttgacgtggcctccagcggtcatgaccttgactcgtcttggcccaccttc
gcaaggaggacactgggcatgcccaactcacctggccacatgtggaaaccacccagtcgc
agctctagcatcaacagtctggccagcacctactcacagcaggctcatgagttccttggc
agccctgacaatggcccaagcatgctgagcgagttgaacgagttgttgccttccagcgta
gaggtgggtatgttggacgagctccgcctggagctggaccagtcagagctgaagcagcgg
gagctcctggacagggtacagcagatgggggaggagggtgctgagctcagacgtgtggtg
gtggagctacagaggcagctggacgtgtcactgaccgcccaggagaaacagcagggaatg
caagggaccctgaaagacctggaggcacgggaggaggccttgtcctgcgagctggcagcc
ctgagggccggggagagggccagggagatcgaaaatcggcaccttcaggagaagctggca
gccgcagaggggaagaacgtagaactaatgaccaaactggatggggtgttggatgagaag
ggccagcaggcgactagctactttgactcggcacagaagatccatgagctactggacaga
ctgaaggaggctgagagggggaagatagaggctctagcagagggagaggataggaggaga
caggccgacaggctggcagatgagctaagggtcaaagaggtggcagaaaagaaggatgag
gccaagctcgagtcgctgtcaaaatccattgcagaggggaacgctaagtttgcggagtgt
gcagaggagcagcgtaatgccattgacaagctgaagttgacattgactttgagagagaag
gaggtcaacaacctgcagaggcagctgcaggacctccagtgtgttctggaagagatggag
agacaagcagaggaggccagaaacagagcagaggaggagaaagaggagatccaggaaagc
atatgcagtctgaaagaggccttggaggtggaacaactctacctgaaggagcagttgaag
agcagagaggcggagctgctctccagtatacagaggcttcagcacctggaggtccagagc
catagcctgacaacggagagggacatcctgagcgccaacctctccaagctggaatctagc
atcagggagcaggccaataaaattgaagagtacaagactcagtgcaccaacctgatggag
ctgaatgggaagttgcttgacacagtgaagaggaatgaggagctgaagaaggagctggca
gagagccgggcagcactggagggcgaggtggctgctctcagggtgtctgacaagcacctg
aggggccagctggacgacgccaaggtaacagtggatgagaaggacaggaagttgcgtgag
gagaaccgggccttggacgagagtttacagagggcagccatggccgctgcggtctcagat
gcctctaccaaacggctggagcaggagaaccaaggcctgagggaggagcaggctacggtg
agggcggcgctgagctccatgcaggaggaactgaagtccatccacgggcagattggagag
ctggagaagagcttgggggcatcccgcaggagcgaggccagcctgcaggagcagctcaaa
gaccggaaggcccagctagagaacaaggagaagagctgtgcagagctccaggccagggtg
gaggccctggaggccagaggaaggacactggaaaaggctaaggcagatgcagaaaatgcc
tgtgcaaaaaagacaaagctgatagagagggtcaccactgagaaacagacggtggagaga
acacagctacagagaagctctgcccaggccaaggagagccaggaggtagccgccaagctg
actatggtggagggccaactggaagtgaacatgaaggaggtgtccaggttccaggcagaa
gtgatggatttgagagtgcagctgaagacctctggggaggacaggatgaggagccaggcc
cagctggaggtgatggaggcccagaaagacgcactcaggaccctaacagagcagctcaaa
gcccagacagaggcacttaaccagaggcacgtggccgagctcctgcagtgcaaagagagg
gaagaggctctgagcagggagcgtgaccaggaggcagccacccggtccgagtcggctgcc
gcagaggccaccgccaggggagagctggccacgctaaaggcccaaaatgagaggctggcc
atggagaatgctgagatacgtgaaggcctccaccgggccaatacagagatggcagagctt
gggatgactatctgtagactgacagcagaaagggaggaggccaaggaaggctgggcgggg
gaggcagacaggataggggaactggaggagagaacttccggggaggtggagcggctggaa
gcctgcatggctgccatgcgccaggagaacaccggcctaagagaggaactgaggatgaca
gagaaccttccgggagccatgctggagctgcaggacaagctggagaaggcagagggccag
gtgaggagcctccaggacaccagtctggaggagatggaggcggtcaagttccagatgagc
tccgagagcatgaatcatcagaaccagatcaagagtctgaaagatgagctggggaaactg
agggtccagctgcctaaagagcaggagaaggtgtccagtctggagaccaaaatctttgag
atagagggggtgaatgaggagtactcacggctgattggagagaaggatgctcacgtcgca
aagtcggaagccgctattcgtcagagtgagggtgagattcagcgactgagagactctgtc
accagtgccgaggaggctctcttggaggtccaggcggcacgtgaggagctgaagaagaaa
ttggagcaggccgaggttgacaagcatagccattgcctcaggacgacagcagagatcgac
gacctctaccgaaccaagagcaccctggaggagcgcctcatcgaactaatcaaggataag
gacattctgtggcagaagtccgatgctctggagtttgagcagaagctgcgtgcagaggaa
cgctggttgcaggacaaggaggccacccactgcctgggctgtcagggccatttcacctgg
tggctacgccgacaccactgcaggctgtgtggacgcatcttctgctactactgcagtaac
aactttgtgatgaccaagcacagtgggaaaaaggagcgttgctgtagggaatgttacacc
caacatagagccgtggtggagaggttcacagagggtgagctgagtccctccgacacccag
ctgcctccccccgtaattgggcctcactcactccccaaaccagccccctacaaacctact
cccagggttacagtgtcggaccccagcgccaagacagatgacggggcctatgacatcatc
acagaggaggatgcgaacggtatctatgacagcgactcgctgtccctaaccacaggggat
tcactggagggggagcaggacgcacggacactgggggcgctggaaataggcacaggagac
acgaccccagatgacccagaagagaatgtgcccactctgcaggacgcagagatcaccctt
ctcaagtctggagaagtcactctggtcgtccctgtcagcatcgacgacatctctcagttt
ggcgatggctcccgggagctttttgtcaagtccagttgctacagtgtgatctccatcgtc
gtggtcgattgcagccccaccgtgagctggatgttctcctcggagcccaagagcatctcg
ttcggcatggtgtaccgcgtgaccgccgatgtccctgtggaacaatccaaggtgctgatt
cctctgactcgctgtaactcccacaaagaggccatccaaggccagctgaaagtcaggaac
cctggtctctacacactcatcttcgacaactccttctcaaggttcatctccaagaaagtc
ctctaccacttgacactcgagaagccggttatttacgacggaagggatttttaa
DBGET
integrated database retrieval system
