Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411118
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Entry
139411118 CDS
T10872
Name
(RefSeq) DNA excision repair protein ERCC-6-like 2 isoform X1
KO
K20098
DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
Helicases
139411118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139411118
NCBI-ProteinID:
XP_071013088
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Position
6:complement(39254456..39269965)
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AA seq
1576 aa
AA seq
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MMASTSTADIKVWHEGDRCLAPSLRDGTLLREGTIQKLPSTSHGEDMALVKFTEQHDEDE
EEEAVFPVCKLQRPDANQSSTSVVSAQEKPLFLCSQTPPGPSEPLVLSQSGVAVPYTINR
YLRYYQKEGIQFIYDNYAQSRGCILGDDMGLGKTIQVIGFLAAVLGKTGTWEDIENNRPQ
FLLTQIPTQRSKPRKVFLIVAPLSVLYNWKEELETWGHFLTVVVHGLRKEEELARIRRGR
SEIALTTYETLRLYLEQFNSIDWSAVIVDEAHKIKNPNSQITGAMKDLRCPVRVGLTGTI
LQNNLDELWCVMDWAIPRCLGSLGNFKNMFSDPIELGQKHSVTKRALATGRRAVRALAAK
LSHWFLRRTKALIREQLPKKDDRVVYCSLTSFQQTVYQAVLDTEDVTLLLRSSEKCDCHS
GHSRRKCCYKVNARGVRVTDLYFSYLAILRKVANHVALLQSKWNTSKKQEQYVNEICEKV
FQKFPDFTEKCKQAAFEAMSDPMYSGKMKVLQRLLKHYTQRKDKVLLFSLSTKLLDVLES
YCMADGLEYSRLDGNTKPRERLKIVKEFNSCPDINLCLVSTMAGGLGLNFVGANIVVLFD
PTWNPANDLQAIDRAYRIGQCRDVTVFRLISLGTVEEVIYLRQVYKQQLQSSVMGKESAR
RYFDAVQGSDDQKGELFGIQNLFRLQTQGTCLTRRILEREGRVEVGVMTSSTHTGEEEER
KSETEAGEVSARDHCELGNGGAIGSVGPSRIPRATTRGVLDFSSGSEEEGEQGGRSKVEK
ANTTLPGRLSLLQHGFSRLLQGSGVRAGSGSESGEHSQSEGGRSDSEEDRDEDTSAMAPK
GLSTAGSGGPQTPTLAPKGGNHLDAAPLKNDWDVSSGSEREEERNGGRWDGQRGRDHDPV
TLSGESDDMGRKIPNLKQGIRRKRRVEEDSDDDSPPSSGSKRSNTKTPVSRMHQVVFDSE
SEDIDIKELIRPCAQTHVLKRPPAHLRRRDGGSKRETSNGPVDQSRRTRQAEDIETFTSS
DENHTPVERVRSVTAPQNHNHGPGPQTDQHGARAFTGLKNPKVNQTVPSAKGPPCGTIDN
VLGGVREVVYTHSNQHVVGGSKAEERISRAALRDVFERRRFSQLPANELRDTQKTQPEHT
PPFHTSHNDVGWVGAVHRPSVDHPVTHTIRSVHHPTQHTTVIIGETPGTIRRQQLEEMAC
VLGPVSLRQFAEEVLRSTSAQRLAQLRQYYTDQGPEVASTIRENFAEPHTAQPKVDRTTP
SSSSTTKHRPNSKRNQRVALEPQAEPRTRHRSVPEPQRDVPSSEEQRVRNARGGKKKSGN
SGMSRAAQCSSSDLDNSRSSPLGPGASRAQPVSSSSSSALSHPQAKPTSSPPRGRSSLLS
SPRKSEVVGRQRYRAQPSSPPSQQVLLTELLGDTSILDDLLRPRSKASLEPQRGFPKTPT
SQAVFTPTSHSATPASCHPTAPPKPPSTPHPRPLTKSVPGPSSSTTRPSRSITTPLTHPI
TPLFFPAPERSKNSHRDFWDILEEGNEERINKLTDLSEVERVCESASVRARGGTGGGEEK
GNTSLWKRNDKFLWKK
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttcaacttccacagctgacataaaagtgtggcatgagggcgacagatgcctc
gctcccagcctcagagatggcaccctactacgagaggggacaatccagaaactcccttcc
acttctcatggtgaggacatggcattggtgaagttcacagagcaacatgatgaagatgaa
gaagaggaggcagtctttccagtctgtaaactccagagaccagacgcaaaccagtcgtcc
accagtgtagtgtctgcccaggagaagcctctattcctctgcagccagacaccccccggg
ccatcagagcccttggtgttgtcacagagtggtgtggcagtcccatacaccatcaacagg
tacctgaggtactaccagaaggaagggatccagttcatctatgacaactatgcccagtcg
agaggatgtatcctgggagatgacatgggtctgggcaagaccattcaggtcattggtttc
ctggctgctgtgctgggtaaaacagggacatgggaggacattgagaacaacaggcctcag
tttcttcttactcagatccccacacagcgaagcaaaccccgaaaggtgttcttgattgtg
gcccctctgtcggtgctgtacaactggaaagaggagctggagacgtggggtcacttcctg
accgttgtagtccacggtctgaggaaagaggaggagctggctcgcatccggaggggacgc
tctgagatcgccctcaccacctacgagaccctacgcctctatctggagcagtttaacagc
attgactggtctgctgtgatagtggacgaggcccacaagatcaagaaccccaactcccag
atcactggggcaatgaaggatctgaggtgtccggtcagagtgggcctcactggcacaatc
ctgcagaacaacctggacgagctctggtgtgtcatggactgggccatccctcgttgcctt
ggcagcctgggtaacttcaagaatatgttttcggaccccatcgaactggggcagaagcac
agcgtaactaagcgggccctagcgacgggcaggagggcggtccgggccctggctgcgaag
ctctcccattggtttctccggaggaccaaggctcttattagagagcagctgcccaaaaaa
gacgacagggtggtgtactgttcgctgacgtcgttccagcagactgtgtaccaggcggta
ctggacacggaggacgtcaccctgctcttgcgctcctcagagaagtgtgactgtcacagt
ggacactcccgcaggaagtgctgctacaaggtgaatgctcggggtgtgcgtgtgacagac
ctgtacttcagttacttggccattctcaggaaggtggccaaccacgtggctttgctgcaa
tccaagtggaacaccagcaaaaagcaggagcagtatgtgaatgagatctgtgagaaggtg
ttccagaagtttcctgacttcacagagaaatgcaagcaggcagcatttgaggccatgtca
gaccccatgtacagcggaaagatgaaggttctccagaggttgttgaaacattacacgcag
agaaaagacaaagtgctattattctccctctccactaagttgctggacgtgctggagagc
tactgcatggcagatgggctggagtatagcagattggatggcaacaccaagcccagagag
aggctgaagatcgtcaaagagttcaacagctgccctgacattaacctctgccttgtctcc
accatggcagggggtctgggcctgaactttgtgggggccaacattgtggtcctgtttgat
cccacctggaaccctgccaatgacctccaggcaattgacagggcgtatcgtataggccag
tgcagggacgtgacagtgttcagactcatctctctgggaacagtggaggaggtcatctac
ctgcgccaggtctacaaacagcagttgcagtcttctgtgatgggtaaggagagtgcccgg
cggtactttgatgcagtgcaggggtccgacgaccagaagggggagctgtttgggatacag
aacctcttcaggctgcagacccaggggacctgcctcaccaggagaatactggagcgggag
ggacgagtggaggtaggagtaatgacgtccagcacccacacaggggaagaggaggagagg
aagagcgagaccgaggctggggaggtttccgcaagggaccactgtgaactgggcaatgga
ggggcgattggcagtgtagggccctcgaggatccccagggcaacaaccaggggggtgctg
gacttcagcagtggcagtgaggaggagggggaacaggggggcaggagtaaggtggagaag
gcgaacactacccttcctggccgactcagtctccttcagcatggcttctccaggttgctc
cagggatcaggggtcagggctggatcagggtcagaatcaggggagcatagccagagtgag
gggggaaggagtgattctgaggaggacagggatgaagacacttctgccatggcaccaaag
ggcctcagcaccgcagggagtggaggcccccagacccctacattggcccccaagggtggg
aaccacttggatgcagctcctctgaagaacgactgggacgtctccagtggctctgagaga
gaggaagaaaggaatggagggagatgggatggacagagggggcgagaccatgatcctgtt
acactgtcaggcgagagtgatgacatggggagaaaaataccaaatctgaaacaaggaata
aggaggaagaggagggtggaggaggacagtgatgatgattcacccccctccagtggaagc
aaacgatctaacactaaaactccagtttccagaatgcaccaggtggtgtttgactctgag
tctgaggacatagacattaaggagctaatcagaccttgtgcacaaactcatgtgcttaag
agacccccagcacacctgagaaggagagatggtggtagtaagagagagaccagcaacgga
ccagtagaccagagtagaagaaccagacaagcagaggacattgagacttttacctcctca
gacgaaaaccacactccagtcgaaagagtccgatctgttacagccccacagaaccacaat
catggcccaggcccacagacagaccaacacggagcgagggcgtttacaggtctgaaaaac
ccaaaagtgaaccagactgtcccttctgccaaaggaccgccctgtggaacgattgacaat
gtgttaggtggtgtacgggaggtggtttacacccactctaaccaacatgtggtgggcggg
agcaaggccgaggagcgaatcagcagagccgctctcagagacgtgtttgagcgcaggagg
ttctcccagcttccagccaatgaactccgggacacacagaagacccagcctgaacacact
ccaccattccatacttcccataatgatgttggttgggtgggagcagtgcacagacccagt
gtggaccacccagtcacacacaccatcaggagcgtccaccaccccacccaacacaccacc
gtcattatcggagagacccccggaaccatccgaaggcagcagctggaggagatggcgtgt
gtacttggacctgtttcattgagacagtttgctgaggaggttctgaggagtacctctgcc
cagagactggctcagctacgacagtactacactgaccagggccctgaggtggcttccacc
atcagggagaacttcgctgaaccacacacagcccagcccaaagttgacaggacaacccct
tcctcctcctctacaaccaaacacagacccaactccaaaaggaaccagagagttgctcta
gaaccccaagcagaacctagaacccgacataggtccgttccagaaccccagagggatgtt
ccctcttctgaggagcagagggtccggaacgccagaggagggaagaagaagagtggtaat
agtggaatgtccagagctgctcagtgctccagctcagacctggacaatagtaggagtagt
cctctgggaccaggggcctctagagctcaacccgtttcctcctcctcttcttcagctctc
agccatccccaggctaagcccacatccagccctccgagagggaggagcagcctgctgtcc
tcccccaggaagagtgaggttgtggggaggcagcggtacagagctcagccttcctctccc
cccagccagcaggtcctcctcacagagctgctaggagacacctccatcctggacgacctg
ctgcgacccagaagcaaggcctccttagagcctcagaggggcttcccaaaaacccctact
tcacaggctgtctttacacccacttctcactctgccacacctgcctcctgtcaccctaca
gcgcctcccaaaccgcccagcacaccccaccctcggcccctgacaaaatccgtcccaggc
ccttcttctagtactactcgtccctctcgatccatcaccacacccctcacacaccccatt
acaccacttttctttccagcccctgagaggtcaaagaacagccacagagacttctgggac
attttggaggagggtaacgaggagaggatcaacaaactgacggacctgtcggaggtagag
agggtgtgtgagagtgctagcgtcagggccagaggaggaacaggaggaggagaggagaaa
gggaacacgtcactttggaagaggaacgacaagttcctgtggaagaagtga
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