Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413129
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Entry
139413129 CDS
T10872
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
139413129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139413129
Enzymes [BR:
ocla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
139413129
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
139413129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
C8-3_MUC4
THAP
Motif
Other DBs
NCBI-GeneID:
139413129
NCBI-ProteinID:
XP_071016314
LinkDB
All DBs
Position
7:complement(27309925..27314416)
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AA seq
912 aa
AA seq
DB search
MEGTSKSESAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERVAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNVTTDLNKVCRQLHDPFVS
LSEVSIGLFFAFKPMLAAVANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVVKCILDGEMMAYNPTTDTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDHKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGTERPEVYIDPCNSVIIQVKAAEIVSSEMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHFRINDEPEKKKRKLPAAAKPKKAVGVIDHFKSQDLSGVTK
ETDMFEDVEFCVMNGNEAHPKADLEKAVARCGGIVVQNPGPDTYCVIAAVENMRVKNLIS
SDQHDVVWAAWLLECLDRKQVVPWQPRHMIHISPSTKEHFAKEYDCYGDSYFVDTDEQQL
REVFGRIGRVDTLTAQCIAKLEERFSWDDLPTSMFRPFRVYMDRYADIGDPKSIVPATCL
DTRALEFRFHGGTVVQKLEEGVSHVIVVEEIRVLALRTLRRLFTKKFKIVRESWVTESIK
AGFLRNDNDYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaagtgaatctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatacagaagaccaaactccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctaccaccacagactctttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtgtggcctatggcattaaagagagtatgttagccaagctctacata
gacgtcttgggtctccccaagaatggaccggaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggagatttcgctcttatgacctactttgtgttgaag
aaacgctgcacaagccagggaaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgctggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgatcctgaaggacatg
aagctgggggtcagcaaagagaccgtgctccaggtgttccacttagatgcggccgagctc
tataacgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctttgtgtcc
ctcagcgaagtgtccattggcctgttctttgccttcaaacctatgctggccgccgtggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaggatggcgatgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccatgtagtcaaatgcatcctggatggggagatgatggcg
tacaaccccactaccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactccgagctgcagacgtgcttttgcgttttcgatgtacttcttgtgaacgac
cacaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtaaacgccctcaacgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataagcgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttccttgtcgcggtggccgaagctccgaagcctgga
gagaaaccctccgttttccacacgctctgtcgcatcggttccggctacaccatgaaggag
ctgtatgacttggggttgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctctattctgtgtgggacggagagaccggaagtctacattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgagatgtacaaaaccaactgc
acgctacgcttccccaggatcgagaagatccgggaggacaaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcatccgggaagttgttctcgcgccac
ttccgcatcaatgacgagcctgaaaagaagaagcgcaagttgccggcagcggccaagccc
aagaaagctgtcggcgtcatcgaccacttcaagtcccaggacctatctggcgttaccaag
gagacggacatgttcgaggacgtggagttctgcgttatgaatggcaatgaggcgcacccc
aaggcggaccttgagaaagcagtggcccgatgtggcggtattgtagtccagaacccggga
ccggacacctactgtgtgatcgccgctgtggagaacatgcgcgtgaagaacctgatctct
tcagaccagcacgacgtagtgtgggctgcctggctgctggagtgcctagacaggaagcag
gtggtgccatggcaaccgcgtcacatgatacacatttcaccctccaccaaggagcacttt
gccaaggaatacgactgctacggagacagctactttgtggacacggacgagcagcagctg
agggaagtctttggtcggattggtagagtggacactttgacggcacagtgcatcgctaag
ttggaggaacgcttcagctgggatgacctccccactagcatgttcagacctttcagggtc
tacatggacagatacgcagacataggagaccctaaaagcatcgtaccggcaacttgtctg
gacacgcgggctctggaattccgcttccacggagggacagtagtgcagaagcttgaggaa
ggggtctctcatgtcatagtggtggaggaaataagagtgttggctttaagaaccctcaga
cgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagaatctatcaaa
gcagggtttttgcggaatgacaatgactacctagtgtaa
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