Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139414907
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Entry
139414907 CDS
T10872
Name
(RefSeq) thrombospondin-1-like isoform X1
KO
K16857
thrombospondin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04115
p53 signaling pathway
ocla04145
Phagosome
ocla04148
Efferocytosis
ocla04350
TGF-beta signaling pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Opsonins
139414907
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139414907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139414907
NCBI-ProteinID:
XP_071018620
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Position
8:complement(8677813..8699135)
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AA seq
1185 aa
AA seq
DB search
MKLTGIFLLLMLWTCESVRVAESRDDNSVYDLFELVHVSKKTHGVTLVKGDDPYSPAYKI
LNPDLIPEVPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS
NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA
PIQSILTQETPITARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQNSVLTDRI
IVMDNPINGSSPAIRTDYTGHKSKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK
VTDENKLLMNRAGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVSDGECCPRCGTLSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFRQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCQGEG
RQTEKCTKSPCPVNGNWGPWSLWDTCSSTCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT
QLCNRNACPVDGCLSNPCFPGTKCTSVPDGTWSCGKCPTGYSGDGIKCEDIDECKEVPDA
CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHDCN
KNARCNYLGHFAEPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC
PNLPNSGQEDYDKDGVGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCP
YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPL
EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDEKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKRIMKDSGSI
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRGGEGGNSVVVSLGVN
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacaggaatatttctgctattgatgctttggacctgcgagagcgtacgagtt
gcagagagccgagacgacaatagcgtgtacgacctgttcgagctggtccacgtctccaag
aagacccacggagtgaccctagtgaagggcgacgacccatacagtcccgcctacaagatc
ctcaacccggacctgatccccgaggtccccgagagctccttcagggacctcattgattcc
atccacgcggagaggggattccttctcctcctcaatttcaagcagttcaagcggaccagg
ggctccctcctgacggtggaaaagcgtgacggatccggagccgtgttcgagatcgtctcc
aacgggaaagcgaacaccctggatgtggttttctctacagtgaataagcaacaggtggtg
tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag
gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactggacgct
cccatccagagcatcctcactcaggagactcccatcacggcgcgtctcagaatcgggaaa
ggagcggtgaaggaccggttcatgggggtgctccaaaacgtgcgctttgtctttggaacc
accttagaagcgatactgcgcaacaaaggatgccaaaactctgttctgactgatagaatc
atcgtcatggacaaccccatcaatgggtccagccctgccattaggactgactacactggc
cacaaaagtaaagacctccagatgatctgtgggttctcctgtgaggacctggctggcatg
ttcaaggaactgaaggggttgggagtggtggtgaaggagctgtctaacgagctgcgcaaa
gtgacggatgagaacaagctgttgatgaacagagcggggatccacagtggagtctgtctg
cacaacggcatcgtccacaagaacaaggccgagtggactgtcgacgactgcactgagtgc
acttgtcagaactctgccaccgtatgccgcaagatctcctgcccactgatcccctgtgcc
aacgccaccgtgtctgatggagagtgttgcccgcgctgtggaacactgagtgactatgcg
gaggacggctggtccctctggtctgaatggacccactgttccgtgtcttgtgggcggggc
attcagcagaggggccgttcctgcgaccgcatcaacaacaactgcgagggaacctccgtc
caaaccagggactgctaccttcaggagtgtgacaaacgcttcaggcaggacggcgcctgg
agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt
atccgcctctgcaactcccccacaccccagctgggaggcaaggactgccaaggagaggga
agacagactgagaagtgcaccaagtcaccctgccccgtcaacggtaactggggaccctgg
tcgctatgggatacctgctcttccacttgtgggggaggagcccagacacgtaaacgtctc
tgcaacgaccccgcccccaaatatggtggcaaggagtgccagggtgactccaaggccact
cagctgtgcaacaggaacgcctgtcccgtcgatggttgtctgtctaacccctgctttcct
gggaccaagtgcaccagcgttcccgatggaacatggagttgtgggaaatgtcccactggt
tactctggtgacggcatcaaatgcgaggacattgacgagtgtaaagaggttcctgacgct
tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg
ccctgtcccgcacgctactctggccctcagcccttcggcaggggagtggaggaggccacc
gccaagaaacaggtgtgtacaccacgtaacccctgcttggatgggagccacgactgcaac
aagaacgcacgctgtaactaccttggacactttgccgaacccatgtaccgctgtgagtgt
aagcctggctatgctggaaacggacacatctgtggtgaggacacggacctggacggatgg
cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc
cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcgtgt
gacaacgatgatgacaatgatggcattcctgacgacagggataactgtccgttcgtgtac
aaccccaggcaatatgactatgacagagatgatgttggagatcgttgtgataactgtcct
tacaacagcaaccctgaccagaccgacacagacaacaacggggaaggagacgcctgctct
gtggacattgatggagatggtattctgaatgagaaagacaactgcccgtacgtctacaac
gtggaccagagagacaccgacctggacggtgtgggagacatgtgtgacaactgtcctctg
gaacacaaccctgaccaggttgactctgatgacgaccgtgtgggagacaagtgtgacagc
aaccaggacatcgatgaggacggccaccagaataacctggacaactgcccctacatcccc
aacgctaaccaggccgaccacgacaaagacggcaagggagacgcctgcgaccacgatgac
gacaacgacgggatccctgatgagaaagacaactgcagactggccttcaaccctgaccag
ctcgactctgatggtgacggtcgcggagatgtttgcaaagatgattttgaccaagacaac
gtccctgacatctacgacgtgtgtccagagaactttgacatcagcgaaacggacttcagg
aagttccagatggttcccctggaccccaagggaacgtcccagatcgaccccaactgggtg
gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt
ggttttgatgagttcaacgcggtggacttcagtggaaccttcttcatcaacacagagaga
gatgatgattacgccggctttgtgttcggctaccagtccagctccaggttctacgttgtg
atgtggaagcagatcacacagacttactggagcaacaaacccaccaaggctcagggatac
tcaggactgtccatcaaggtggtcaactctactactggacctggagagcacctcaggaac
gctctctggcacacgggcaacaccccaggacaggtgaggactctgtggcacgaccctaag
aatgttggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca
ggacacatcagagtggtcatgtacgaggggaagaggatcatgaaggattccgggagcata
tacgacaagacgtacgcaggcggaagactaggcctctttgtcttctcgcaagagatggta
tacttctcagacctcaagtatgaatgcagagggggcgaagggggaaattctgttgtggtc
agcctcggggtaaattga
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