Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139414907
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Entry
139414907 CDS
T10872
Name
(RefSeq) thrombospondin-1-like isoform X1
KO
K16857
thrombospondin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04115
p53 signaling pathway
ocla04145
Phagosome
ocla04148
Efferocytosis
ocla04350
TGF-beta signaling pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
139414907
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139414907
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139414907
04148 Efferocytosis
139414907
09143 Cell growth and death
04115 p53 signaling pathway
139414907
09144 Cellular community - eukaryotes
04510 Focal adhesion
139414907
09142 Cell motility
04820 Cytoskeleton in muscle cells
139414907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139414907
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139414907
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Opsonins
139414907
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139414907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_ADAMTS
EGF_3
TSP1_CFP_C
Laminin_G_3
TSP1_CCN
EGF
cEGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
139414907
NCBI-ProteinID:
XP_071018620
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All DBs
Position
8:complement(8677813..8699135)
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AA seq
1185 aa
AA seq
DB search
MKLTGIFLLLMLWTCESVRVAESRDDNSVYDLFELVHVSKKTHGVTLVKGDDPYSPAYKI
LNPDLIPEVPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS
NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA
PIQSILTQETPITARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQNSVLTDRI
IVMDNPINGSSPAIRTDYTGHKSKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK
VTDENKLLMNRAGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVSDGECCPRCGTLSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFRQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCQGEG
RQTEKCTKSPCPVNGNWGPWSLWDTCSSTCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT
QLCNRNACPVDGCLSNPCFPGTKCTSVPDGTWSCGKCPTGYSGDGIKCEDIDECKEVPDA
CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHDCN
KNARCNYLGHFAEPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC
PNLPNSGQEDYDKDGVGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCP
YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPL
EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDEKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKRIMKDSGSI
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRGGEGGNSVVVSLGVN
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacaggaatatttctgctattgatgctttggacctgcgagagcgtacgagtt
gcagagagccgagacgacaatagcgtgtacgacctgttcgagctggtccacgtctccaag
aagacccacggagtgaccctagtgaagggcgacgacccatacagtcccgcctacaagatc
ctcaacccggacctgatccccgaggtccccgagagctccttcagggacctcattgattcc
atccacgcggagaggggattccttctcctcctcaatttcaagcagttcaagcggaccagg
ggctccctcctgacggtggaaaagcgtgacggatccggagccgtgttcgagatcgtctcc
aacgggaaagcgaacaccctggatgtggttttctctacagtgaataagcaacaggtggtg
tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag
gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactggacgct
cccatccagagcatcctcactcaggagactcccatcacggcgcgtctcagaatcgggaaa
ggagcggtgaaggaccggttcatgggggtgctccaaaacgtgcgctttgtctttggaacc
accttagaagcgatactgcgcaacaaaggatgccaaaactctgttctgactgatagaatc
atcgtcatggacaaccccatcaatgggtccagccctgccattaggactgactacactggc
cacaaaagtaaagacctccagatgatctgtgggttctcctgtgaggacctggctggcatg
ttcaaggaactgaaggggttgggagtggtggtgaaggagctgtctaacgagctgcgcaaa
gtgacggatgagaacaagctgttgatgaacagagcggggatccacagtggagtctgtctg
cacaacggcatcgtccacaagaacaaggccgagtggactgtcgacgactgcactgagtgc
acttgtcagaactctgccaccgtatgccgcaagatctcctgcccactgatcccctgtgcc
aacgccaccgtgtctgatggagagtgttgcccgcgctgtggaacactgagtgactatgcg
gaggacggctggtccctctggtctgaatggacccactgttccgtgtcttgtgggcggggc
attcagcagaggggccgttcctgcgaccgcatcaacaacaactgcgagggaacctccgtc
caaaccagggactgctaccttcaggagtgtgacaaacgcttcaggcaggacggcgcctgg
agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt
atccgcctctgcaactcccccacaccccagctgggaggcaaggactgccaaggagaggga
agacagactgagaagtgcaccaagtcaccctgccccgtcaacggtaactggggaccctgg
tcgctatgggatacctgctcttccacttgtgggggaggagcccagacacgtaaacgtctc
tgcaacgaccccgcccccaaatatggtggcaaggagtgccagggtgactccaaggccact
cagctgtgcaacaggaacgcctgtcccgtcgatggttgtctgtctaacccctgctttcct
gggaccaagtgcaccagcgttcccgatggaacatggagttgtgggaaatgtcccactggt
tactctggtgacggcatcaaatgcgaggacattgacgagtgtaaagaggttcctgacgct
tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg
ccctgtcccgcacgctactctggccctcagcccttcggcaggggagtggaggaggccacc
gccaagaaacaggtgtgtacaccacgtaacccctgcttggatgggagccacgactgcaac
aagaacgcacgctgtaactaccttggacactttgccgaacccatgtaccgctgtgagtgt
aagcctggctatgctggaaacggacacatctgtggtgaggacacggacctggacggatgg
cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc
cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcgtgt
gacaacgatgatgacaatgatggcattcctgacgacagggataactgtccgttcgtgtac
aaccccaggcaatatgactatgacagagatgatgttggagatcgttgtgataactgtcct
tacaacagcaaccctgaccagaccgacacagacaacaacggggaaggagacgcctgctct
gtggacattgatggagatggtattctgaatgagaaagacaactgcccgtacgtctacaac
gtggaccagagagacaccgacctggacggtgtgggagacatgtgtgacaactgtcctctg
gaacacaaccctgaccaggttgactctgatgacgaccgtgtgggagacaagtgtgacagc
aaccaggacatcgatgaggacggccaccagaataacctggacaactgcccctacatcccc
aacgctaaccaggccgaccacgacaaagacggcaagggagacgcctgcgaccacgatgac
gacaacgacgggatccctgatgagaaagacaactgcagactggccttcaaccctgaccag
ctcgactctgatggtgacggtcgcggagatgtttgcaaagatgattttgaccaagacaac
gtccctgacatctacgacgtgtgtccagagaactttgacatcagcgaaacggacttcagg
aagttccagatggttcccctggaccccaagggaacgtcccagatcgaccccaactgggtg
gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt
ggttttgatgagttcaacgcggtggacttcagtggaaccttcttcatcaacacagagaga
gatgatgattacgccggctttgtgttcggctaccagtccagctccaggttctacgttgtg
atgtggaagcagatcacacagacttactggagcaacaaacccaccaaggctcagggatac
tcaggactgtccatcaaggtggtcaactctactactggacctggagagcacctcaggaac
gctctctggcacacgggcaacaccccaggacaggtgaggactctgtggcacgaccctaag
aatgttggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca
ggacacatcagagtggtcatgtacgaggggaagaggatcatgaaggattccgggagcata
tacgacaagacgtacgcaggcggaagactaggcctctttgtcttctcgcaagagatggta
tacttctcagacctcaagtatgaatgcagagggggcgaagggggaaattctgttgtggtc
agcctcggggtaaattga
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integrated database retrieval system
