Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416077
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Entry
139416077 CDS
T10872
Name
(RefSeq) tumor necrosis factor ligand superfamily member 12-like
KO
K05474
tumor necrosis factor ligand superfamily member 12
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
139416077
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ocla04052
]
139416077
Cytokines and neuropeptides [BR:
ocla04052
]
Cytokines
Tumor necrosis fators
139416077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNF
C1q
Fusion_gly
DUF2681
PM2_P3
Motif
Other DBs
NCBI-GeneID:
139416077
NCBI-ProteinID:
XP_071020439
LinkDB
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Position
9:21011327..21019860
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AA seq
253 aa
AA seq
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MIAGECGTTMHRILQRRTVRKFRFVWVFMAMVALSLAACSALFTAWTWRQTLDLSQSVKT
LQDRLEQVNTQRKAIVQLIMEKRELLVGQRVKRDGGTGKGKSGNGKKVASQFEITKESVQ
KVGADGLIKGWTDSEQLNMSKAVKYNTDRGTFTVERAGVYFLYCQVLFNENQSQLVKLEV
AVVKSGQPLQKLQCMEGYGTTPASGSHQFHFLKPCQVSGLLRLEKGAELQAITGAGFSLH
TTGKHYLSLFKVN
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggggaatgtggaacgaccatgcatcgaattctacagaggagaacagtgcgc
aaatttcgcttcgtctgggtattcatggccatggtggctctgtcgctcgccgcctgtagc
gcactatttacggcgtggacctggagacagacgctggacctgtcccagtccgttaaaact
ctgcaagaccgattggagcaagtgaacactcagcgtaaggccattgtccaactcatcatg
gagaagagagagttgctggtggggcaaagggtgaaaagagatgggggaactgggaaaggg
aagagtggaaatggaaagaaggtggcttctcagtttgagataaccaaagagtctgttcag
aaagtgggagctgatggcttgataaaaggatggacggactcggagcagttgaatatgagc
aaagctgtgaagtacaacacagacagaggcaccttcacagtggagagagctggagtctac
ttcctctactgtcaggtgttgttcaatgagaatcagtctcagctggtgaagttggaagtg
gcggtggtgaagagcggccagccgctgcagaagctgcagtgcatggagggctatggcact
acacctgcatccggatcccaccagttccactttctcaaaccctgccaggtgtctggcctg
ctgcggctagagaagggggcagagctacaggccatcacaggcgcaggcttcagcctccac
accacggggaagcactacttaagcctcttcaaggtcaactga
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