Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416419
Help
Entry
139416419 CDS
T10872
Name
(RefSeq) agrin-like isoform X1
KO
K06254
agrin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139416419
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139416419
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139416419
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
139416419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
EGF_laminin
SEA
EGF
Kazal_CFAI
Laminin_G_3
hEGF
Motif
Other DBs
NCBI-GeneID:
139416419
NCBI-ProteinID:
XP_071021113
LinkDB
All DBs
Position
9:46400237..46676210
Genome browser
AA seq
2063 aa
AA seq
DB search
MVSQRRPTHLYGWALMIVAVFCQRCHGSCPEKDLEKREEEANVVLTGTVEEIMNMDPVHN
TYSCKVRVWRYLKGKTMVNGEVLLDGGNKVMIGGFGDPVICDNQVATGDTRIFFVNLAPE
YMWPAHKNELMLNSSLMRITLRNLEEVEHCVDDKPVHFTPAQPPDGCRGMLCGFGAVCER
EATDPSKAECVCKKMVCPSVVAPVCGSDSSTYSNECELEKAQCNTQRRIKVLRKGPCALK
DPCSEVICSYGSTCIQSSDGLSAKCMCPLSCEGKPEQVMCGSDGQDYRNECELHKQACHT
KKNIRLQRQGSCNPCKGLENNLNVACRVEPRTHQPLNIPRPESCPAVNEPLCASDGQTYE
SECHMKRTGMQKGIELKKIHPGRCKKQEECREECKFNGVCQVERLGMRCSCEPIQCDGTY
KPLCGKDGHTYINDCERRRAECQAKAHIPVKQQGPCDLHTPSPCLGKACEFGAACVVKNN
EPVCECHGACPQMPDLVCGSDGHSYGSQCEMKAMGCALQKEIHIQHRGPCDEACANCSFG
AICDGQSGRCVCPQECVESHQPVCGSDGSTYDSECELHVRACTEQLDLRVLAQGECKTCG
SAVCAWGARCVQNKCECPQCQGQAFSPVCGSDGFTYDNTCELGVASCVLKKKIEAAKPGS
CDEECGSGGSGSGIESCEQDRCRTFGGSWDEDAEDDRCVCDFDCHRVPRNPVCGSNGKTY
SNECEMKKARCEKQEHLLIQNQGPCTAISATSPTKLPAQEHCSLSVYGCCRDNKTAALGV
GLAGCPSTCQCNPYGSYKGTCDPGSGQCSCKPGVGGQKCDRCDPSFWNFRGIVTENLSGC
TPCNCDAVGSVRDDCEQMSGLCSCKTGVKGMKCNVCPDGSQMGMSGCDTGADAPTSCDEL
DCKFGALCDEVNGQAHCECPSPDCDEKNKTKVCGSDGVTYADQCQLRTIACRQDKHITVE
RFGQCTESIIEPAGRSTLYPPTSHAAATTPSTAHVRLTSPHYGASLSPWDDDQMEGLPAS
FVEALPPPMATERALTTNRPVTTPRHPPHSTTPHLLGHTSPGSSPTAFEDSGSGEPSGDD
QVAEEEENEEEGSAFGVLEASGEEPVDPTAAATTIPTAEDRSSCDNSPFGCCPDGKTASS
SPEGANCPPTMRFSGFLHLDQVEGQEVFYTPEMEDPKSELFGETARSIESALNELFRKSE
VQKDFMSVRVRSLAPSNSILAFVEAHFDSESRYTVEDIEGALLKQLKAAKETAIMVKKPE
EENIRFTNYGLSSLPYFTTTTTTTATATTPTASPSPFITSRPPGTTRRPYTSRRTTTVPS
PVTTPASTTTITPLHRTRPVPHHTKAQRPCDSHPCRHGGTCEDDGADFTCICPAGRGGAV
CEKLIKYFIPSFGGKSYLAFDTMKAYHTVRIAMEFRAAEMTGILLFNGQDGKKDFLSLTL
VNGKVELKFNTGSGTGTLVSKVQVKQGRWHQLVVTRNRRNAMLSVDNETHIDGASPPGTD
GLNLDTHLFIGGVPEDMMTDVKERTSIGTGLVGCVRMLDVNNLVYNLQEKSGNVLYGTGV
GECGNNPCQPNPCKNGAPCQVKEAEMFHCKCINGYSGPTCADTHNPCEPNRCHPLSQCQV
QPEGGYKCECPMGREGRHCEKVLEKKGAYMPFFSGDSYLELKGLHTYGHDLHQKVSMTVV
LMANDSNGMIFYSGQKTDGKGDFISLSLNDGILEFRYDLGKGPAVIRSKDKIKMGVWNTV
NLERANRKGEININGKDPVRGESPNQHTALNLKESLFVGGAPDFSRLARAASLKDGFKGT
IQKITLMGTPILRQENALHSSDVAMFEGHSCSREPCHNGGRCNPLLESYECVCLLGFTGT
HCQNTIFEKSAGETESIAFDGRTFIEYHNAVTKSEKALLVNKFELSIKTEATQGLVLWSG
KGVERSDYIALAVVDGRVQMTYDLGSKPVVLRSTVRVNTNRWIHIKASRALRDGSLQVGN
EAAVTGSSPLAATQLDTDGALWLGGLEELAVARRLPKAYSTGFVGCVKDVAVDGVELHLV
EDALNSPKILHCSTSGTAATAKK
NT seq
6192 nt
NT seq
+upstream
nt +downstream
nt
atggtttcacaacggagaccaactcacttgtacgggtgggcattgatgatagtcgccgtt
ttctgtcaacgatgtcacggaagttgtccggagaaagacttggagaaaagggaagaggag
gcgaacgtagttttgactggtaccgttgaagaaatcatgaacatggacccagtgcataat
acatactcgtgcaaggtgagggtatggcggtacctgaaaggcaagaccatggtcaacggc
gaggttcttctagacggcggcaacaaggtgatgatcggcggcttcggggaccctgtgata
tgcgacaaccaggttgccactggcgacacgcgcattttctttgtcaacctggccccggag
tacatgtggcctgcacataagaacgagctgatgctcaactccagcctgatgaggattacc
ctgcgtaacctggaggaggtggagcactgtgtggacgacaaacctgttcacttcacgccg
gcccagcctcctgatggttgtagaggtatgctgtgcggcttcggggcggtgtgtgagcgt
gaagcgactgacccctctaaggcggagtgtgtatgcaagaagatggtttgtccgtcggtt
gtggcgcccgtgtgcggctcagactcctccacctactccaacgagtgcgagctggagaag
gcccagtgcaacacgcagcgacgcatcaaggtgctgcgcaagggaccctgtgccctgaag
gatccatgcagcgaggtgatctgcagttacggcagcacctgcatccagtcatcggacggc
ctgtcggccaagtgcatgtgcccgctgagctgcgaaggcaagcccgagcaggtgatgtgt
ggcagcgatggccaggactaccgcaacgagtgtgagctccacaagcaggcctgccatacc
aagaagaacatccgccttcagcgccagggatcctgcaacccatgtaaaggcctcgagaac
aacctgaacgttgcatgccgggtagaaccgcgcacccaccagcccctgaatatcccccgc
ccggagtcctgccctgccgtcaatgagccactgtgtgccagcgatgggcagacgtacgag
agtgagtgccatatgaagcggacgggcatgcagaagggcattgaactcaagaagatccac
ccgggccgctgcaagaaacaagaggagtgcagggaggagtgcaagttcaacggcgtgtgc
caggtggagcgtctgggcatgcgctgctcctgcgagcccatccagtgcgatggcacctac
aagccgctgtgcggcaaggatggccatacctacatcaatgactgcgagcgccggcgggct
gagtgccaggccaaggcccatattcctgtcaagcagcaaggcccgtgtgatctacacact
cccagcccgtgcctggggaaggcctgcgagtttggggccgcgtgcgtggtgaagaacaac
gagcccgtgtgcgagtgccatggcgcctgcccccagatgcccgacctggtgtgcggcagt
gacggccacagctacggcagccagtgtgagatgaaggccatgggctgcgccctgcagaag
gagattcacatccagcaccgaggaccctgcgacgaggcgtgtgccaactgttcgtttggg
gcgatctgcgatgggcagtctggccgctgtgtgtgcccgcaggagtgtgtggagtcccac
caaccggtgtgcggcagcgacggctccacctacgacagcgagtgtgagctccacgtgcgt
gcctgtaccgagcagcttgacctgcgcgtgctcgcccagggagaatgcaagacgtgcggt
agcgccgtgtgtgcctggggggcccgctgcgtccagaacaagtgcgagtgcccgcaatgc
cagggccaggccttctcgcccgtgtgcggcagcgacggcttcacctacgacaacacctgc
gagctgggcgtggcctcctgcgtcctcaaaaagaagattgaggcggccaagcctggcagc
tgcgacgaagagtgtggttcaggaggatcggggtcaggtattgagagctgcgaacaggac
aggtgtcgtacgtttggaggatcgtgggacgaggacgcagaggacgaccgctgtgtctgt
gacttcgactgccatcgcgtgcctcgcaacccggtgtgtggctcaaatgggaagacctac
agcaacgagtgtgaaatgaagaaggctaggtgtgaaaagcaggagcacctgctgatccag
aatcagggaccctgtacagcgatttcggccacctctccgacaaaactgccagcgcaggaa
cactgcagtctgtcagtctatggctgttgccgtgacaacaagacggcggcccttggtgtg
ggacttgccggatgccccagtacatgccagtgtaacccgtacggctcctacaaggggact
tgtgacccgggcagcggccagtgctcctgtaagcccggcgtcgggggacagaagtgcgac
cgctgcgatccaagcttctggaacttccgcggcatcgtcacagagaacttgagcggctgc
acaccgtgtaactgcgacgcggtgggctcggtgagggacgactgcgagcaaatgtcaggc
ctgtgctcctgcaagacaggagtgaagggcatgaagtgcaacgtgtgccccgacggcagc
cagatgggtatgagcggctgcgacacaggtgccgatgccccaacttcatgtgatgagctg
gactgcaagtttggcgcgttgtgtgacgaggtcaatggtcaagcccactgcgaatgtccc
tctcccgactgtgacgagaagaacaagaccaaggtgtgtggctctgatggggtgacctac
gctgaccagtgccagctgaggaccattgcctgtaggcaggacaagcacatcacagtggaa
cgctttggccagtgtacagaaagcatcatagagccggccggccgatccactctttacccc
cccacctcccacgccgccgccaccaccccctccaccgcccacgtcaggctcacgtcgccg
cactacggtgcatcactctctccctgggacgatgatcaaatggaggggctcccggcctct
ttcgtggaagccttgccaccccccatggccacggagagagcgctcaccaccaaccgcccc
gtcaccaccccccgccacccacctcactccaccaccccccacctgcttggccacaccagc
cctggctcctcccctaccgcctttgaagactcagggagcggcgagcccagcggagacgac
caggtggcggaagaggaggagaatgaggaagaaggtagcgccttcggagttctggaggcg
agcggagaggagcctgttgaccccacagctgcggccaccaccatccccacggcggaagat
cgctcgtcgtgtgacaactctcccttcggctgctgtcccgacggcaagacggcctccagc
agccctgagggagccaattgcccccccaccatgaggttcagcggcttcctgcacctagac
caggtggagggccaggaggtcttctacacccctgagatggaggatcccaagtctgagctg
tttggggaaacggccaggagcatcgagagtgctctgaacgagttgttccggaagtcagag
gtgcagaaagacttcatgagtgtccgcgtccgcagcctggctcccagcaactccatcttg
gccttcgtcgaggcccactttgactcagaaagcaggtacacagtggaggacatcgaggga
gccctgctcaagcagctgaaggcagccaaggagacagccatcatggtgaagaagccagag
gaggagaacattcgcttcaccaactacggcctctcctccctcccctacttcaccacaacc
accactacaacggccacagccaccacccccactgccagcccctcccccttcatcacaagc
cgtcccccgggcaccacccgccgcccttacaccagccgccggaccaccaccgtcccatcg
ccagtgaccaccccggcctccactactaccatcacccccctccacaggaccaggcctgtg
ccccaccacaccaaggcccagcggccctgcgactcccacccctgccgccacgggggcacc
tgcgaggacgacggtgctgacttcacctgcatctgccccgccgggagagggggtgccgtc
tgcgagaaactgatcaagtacttcattccgtcgttcgggggtaagtcctacctggccttt
gacaccatgaaggcttaccacacggtccgcatcgccatggaattcagggccgccgagatg
acgggcatcctcctcttcaacggccaggacggcaagaaggacttcctgtctctcaccctg
gtcaacggcaaggtggagctcaagttcaacacaggttcgggcacaggcaccttggtcagc
aaggtccaggttaagcagggtcgctggcatcagctggtagtgacaaggaaccggcgcaac
gccatgctgagcgtggacaatgagacccacatcgacggcgccagcccccccggcaccgac
ggcctcaacctggacactcacctgttcatcggaggggttcccgaagacatgatgacagat
gtgaaggagaggacctccatcggtacgggtctggtgggctgtgtgcgcatgctggacgtc
aacaacctggtgtacaacctgcaggagaagagtggcaacgtgctgtacggcaccggcgtg
ggcgagtgcggcaacaatccgtgccagcctaacccttgcaagaatggcgccccgtgccag
gtcaaggaggccgagatgttccactgcaagtgcatcaacggctactccggtccgacgtgc
gccgacacccacaacccgtgcgagcccaacagatgccaccccttgtcccagtgccaggtg
cagccggagggagggtacaagtgcgagtgtcccatgggtcgcgagggacgccactgcgag
aaagtgttggagaagaaaggggcctacatgccgttctttagcggagactcttacctggag
ctgaagggattgcacacctacggtcacgatctccaccaaaaggtcagcatgacagtggtg
ctcatggccaatgactccaacggcatgatcttctacagcggccagaagacggacggcaaa
ggtgacttcatctccctctccctcaacgacggcatcctggagttccgctatgacttgggc
aagggccccgctgtcatcaggagtaaagataagatcaagatgggcgtgtggaacacagtg
aacctggagcgggccaatcgaaagggagagattaacatcaacggaaaggacccagtcaga
ggagagtcgccgaaccaacacaccgctctcaacctgaaggagtctctgtttgtgggtggt
gctcctgatttcagccggctagcaagggccgcctcgctcaaagatggcttcaaggggacc
attcagaagatcaccctgatgggcacgcccatcctccggcaggagaacgcgctgcactcc
agtgacgtggccatgttcgagggccactcctgcagccgtgagccctgccacaacgggggt
cgctgcaaccccctgctggagagctatgagtgtgtgtgcctcctcggcttcacaggcaca
cactgtcagaacaccatcttcgagaagtctgccggggaaacggagtccatcgcctttgac
ggccggacattcattgagtaccacaacgctgtcaccaagagtgagaaagccctgctggtg
aacaagtttgaactgagcattaagaccgaggccactcagggcctggtgctgtggagtggt
aagggcgtggagcgatctgactacatcgccctggcggtggtggacggccgtgtgcagatg
acctacgacctgggctccaagcctgtggtgctgcgctcgacggtccgcgtcaacaccaac
cgctggatccacatcaaggccagcagagcacttagggacggctctctccaggtgggcaac
gaggcagcggtcacagggtcgtcgcccctggcagccactcagctggacacagacggagcc
ctctggttgggtggcttggaggagttggctgtggcccggagactgcctaaggcctacagc
acaggttttgtgggctgtgtaaaggatgtcgcggtggacggcgtggagctccacctggtg
gaggacgccctgaacagccccaaaatattacactgttccacctctggcacagccgccacg
gccaaaaaatag
DBGET
integrated database retrieval system
