Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139417898
Help
Entry
139417898 CDS
T10872
Name
(RefSeq) short transient receptor potential channel 6-like
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139417898
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
139417898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank_4
Ank
Cmr1_C
rve_3
CrgA
Motif
Other DBs
NCBI-GeneID:
139417898
NCBI-ProteinID:
XP_071022983
LinkDB
All DBs
Position
10:333439..390164
Genome browser
AA seq
894 aa
AA seq
DB search
MNQHRSVSEQNHVIERRVRSRDNLLINADFGDDNCSSYHGYYPGRSSAERQLLARQAVAK
RRQALRGPAYMFSDPPISLSDAEQRFLEAAEYGNIPEVRRMVLHMPSLNVNAVDYMGQNA
LQLAVANEHLEVTELLLGRVELSRVGDALLLAISKGYVRITEVLLGHRSFSDAQRLTASP
AQVDMLDDFYAYDEDGTRFSHDVTPVILAAHCHEYEIVHNLLGKGARIDPPHDYFCCCDS
CNYQQQFDSFSHSRSRINAYRGLASPAYLSLSNEDPVLAALELSNELAVLANIEKEFKND
YRRLSGQCKDYVVGLLDLCRSTEEVEAILSGDTDSEEKYHPPGRPSLMRLKLAIKYELKK
FVAHPNCQQQLLSIWYENLPGLRQQTTAVKLLVVLGVAVGLPGLAVAYLVAPCSRVGKVM
RSPFMKFVAHASSFSIFLCLLVLNAADRFAGTTLLPNMTTHLPTRLQQNQQQEHEEDPTM
LYRMTTTPFTWMEILIISWVIGMIWAEVKEIWSQGAGEYLLEPWNFLDFGMLAIFLASFS
SRFSAYNHTHSAQLYVHTHYTHLSTLDNITLPPHVHYYTLARLSWLPSDPQLISEGLYAV
AVVLSFSRIAYILPANESFGPLQISLGRTVKDILKFMVIFILVFLAFMIGMFNLYSYYLG
AKQNDAFTTLEESFKTLFWAIFGLSEVKSVVINNDHKFIENIGYVLYGVYNVTMVIVLLN
MLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKAMLGLATAVR
ELLLHSHTQPPDGAQLNQLGDSKASGYSNSPRPTRYQKIMKRLIKRYIIKAQTDKENDEI
NEGELKEIKQDISSLRYELLEDKNHNMEELQELLGRLRETYNTHHTHHTEEHTQ
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcatcggtctgtgtcggaacagaaccatgtgatcgagcggagggtcaggagt
cgtgacaacctgctcatcaatgcagactttggagatgacaactgttccagttaccatgga
tactacccaggtcgcagcagtgcagagcgacagctcctggcacgtcaggcggttgctaag
cgacgacaggccctgcgaggccccgcctacatgttctcggatccgcccatcagcctctcg
gatgcagaacagcgcttcctggaggcggcagagtatggcaatatcccagaggtgcgacgc
atggtcctacacatgcccagtctcaacgtgaacgcagtagactacatgggccagaatgca
ttgcagctggcggtggccaatgagcatctagaggtgactgagctgctgcttgggagagtg
gagctatccagggtgggagacgctctgctactggccatcagtaaaggttatgtgcgtata
acggaggtgttgctaggccaccgttcgttcagtgacgcgcagcgcctgacagcaagccct
gcccaggtggacatgttggatgacttctacgcttatgatgaggatgggacacgtttctcc
catgatgtgactccagtgattcttgctgctcattgtcatgaatatgagattgtccacaac
ctattgggtaaaggagctcgtatagacccgccccacgactacttttgttgctgtgattcg
tgcaactaccagcagcaatttgactccttcagccactcacggtccaggattaacgcttac
cgtggcctggctagccccgcctacctctcgctgtccaatgaggatccagtattagctgcc
ctggaactcagtaacgagttagctgtcctggccaacatcgagaaggagtttaagaatgac
taccggcgtctgtctgggcagtgtaaagactatgtggtaggtctgttggatctctgtcgc
agcactgaggaggtggaggctatactgagtggagatactgactcagaggagaagtaccat
ccacctggccgaccctcactcatgcgactcaaactggccatcaaatatgaactcaagaag
tttgtagcccatcctaactgtcaacagcagttgttgtctatctggtatgagaacctacca
ggtctgagacagcagactacagctgttaaactactagtggtcctgggagtggctgttgga
ctacctggactagctgtggcttacctggtggccccctgcagtagggtaggaaaggtgatg
agaagtcccttcatgaagttcgtggcccacgcttcctctttctccatctttctgtgtctg
ctggtcttgaacgctgccgaccgcttcgctgggaccacactgctacccaacatgaccaca
catctccccacacgactgcaacagaaccaacaacaagaacatgaggaagaccccaccatg
ctgtatcgtatgaccaccacccccttcacctggatggagattctcatcatatcctgggtc
attggtatgatttgggcagaggtaaaggagatctggtcccagggagcgggagaatacctc
ttagaaccatggaacttcctggacttcggaatgttggccatcttcctggcgtccttcagt
tcccgcttctctgcctataaccacacccactcagcccagctatacgtccacacacactac
acccacctctctacgctggacaacatcacccttccaccacacgtacactactacacactg
gctcgtctctcctggttgccctctgacccccagctgatatctgagggcctgtatgcggtt
gccgtggtgctcagtttcagccgcattgcctacatcctgccagccaatgaaagcttcgga
ccgctgcagatatcactgggacgcactgttaaagacatcttgaagttcatggtgatcttt
atcctggtgttcctggcgtttatgatcggaatgttcaacctctactcttactacctgggg
gccaagcagaacgatgcctttaccactctcgaggagagctttaagactctgttttgggcg
atcttcggcctgtcggaggtgaagtcggtagtcattaacaacgatcacaaattcattgag
aacatcggctacgtgctgtatggtgtttacaatgttaccatggtgatcgttctgctcaac
atgctgatcgcaatgataaacagctctttccaggagatagaggatgatgctgatgtggag
tggaagtttgcccgtgccaagctgtggttctcctactttgaggaaggcaggaccctgccc
gtcccatttaacctggttcctagtcctaaagcaatgctggggctggccactgctgttaga
gagctgctgctacacagccacacacagccacctgacggagcgcagctcaaccagctggga
gacagtaaagcttcaggatacagcaactctccgagacccaccagataccagaagatcatg
aagcgccttataaaacgttacatcatcaaagcccagacggacaaagaaaatgacgagatc
aacgaaggtgagctgaaagagattaagcaggatatctccagtctgcgttatgagctgctg
gaggacaagaatcacaacatggaggagctgcaggagcttctggggaggctgagagagact
tacaacacacaccacacacaccacacagaggaacacacacaataa
DBGET
integrated database retrieval system
