KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418877
Entry
139418877         CDS       T10872                                 
Name
(RefSeq) lysine-specific demethylase 2A-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    139418877
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocla03000]
    139418877
   04121 Ubiquitin system [BR:ocla04121]
    139418877
   03036 Chromosome and associated proteins [BR:ocla03036]
    139418877
Enzymes [BR:ocla01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     139418877
Transcription factors [BR:ocla03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    139418877
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     139418877
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    139418877
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     139418877
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD JmjC F-box Cupin_8 LRR_4 Roughex
Other DBs
NCBI-GeneID: 139418877
NCBI-ProteinID: XP_071024738
LinkDB
Position
10:60534874..60555483
AA seq 1398 aa
MGGFTVANQDQSSYPENVSQQCKAQGVKTQQKPGGRLAPSTVLEQAYSIMVRSGTRRRYH
DDGISDDEIEGKRTFDLEEKLTSERFTSDRVKRMEGKDLTFEYIQRGGLRDPIIFEKPDG
LGIKMPDPDFSVNDVKIFVGSRRMMDVMDVSTQKGIEMSMAQWRRYYETPPSQRDKLYNV
ISLEFSHTKLENLVQRPASVDIIDWVDNMWPRHLKERQIDSTNSITDMQYPKVQKYCLMS
VQGCYTDFHIDFGGSSVWYHILRGGKVFWLIPPTPQNLELYEDWVLSGKQGDIFLGDKAQ
DCQRIELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRVPAK
FRYPFYYEMCWYVLERYLFSLTNTSYLTPDFQKHSLGIGLTRDPSTCESVNGHTQEEDEE
EAPPTRGSKPGVKVHLTPFELEGLWNLLGKLESLPSQKNCVPAGIHNAPALLHDIRALLK
KHANDIPKLSYTGKPIVKWPKRPSWYQPPPPPPPVARPKLSATVVTPRPQKPASSMSVLR
RRRVRCKRCEACVRTECGDCNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSVVCEICAE
GNQEGGEGPVFTLTLMECSNCAQIAHPACLKVTGDGVVNTDLPSCWECPKCVLGITDTES
SGTDDDDSGASVGLGASPLSATALSSTQGPLGVSMEPGSAPGLGDEGWGRAILLYPGLVP
KPPSSSWFSEAPLPSPGQLLLEQHGLKRAGRWASGRRKRVKEDKNKMLHAKRKSSSYLDG
RIAKIYRRRGHSRDDDDDSGSDDDDDNDEGSRGGGGGAGQKMSGPRPRGSGSASRRGYGT
GRRGIWRGSSHIGAGRGSGLAPHSSLKMRRGRGGLGAGRGDREGGRRERGGRVRLRGGTR
MQRRRDESEDDDDDDDDEEDDDSEEDRQHHHRQHRRRRRTDDEEDGDDDEEDSSARDLEG
EDEDMADEDEDEEDGENRSDSEPEPPVLLVSDLNDDLLNGSYLTVTLQRPPRAKRHPGSI
VPKLEAAMSPRTHGGGPGYVQHKTLGKTRHKNGTVAAGNGLAQPAKNPVGRPPRHRINNP
HGDTADRERERDTASHSYSDSSASPTPPPHSSHSPSSLLSLPSFKDVGNEKGGEKEVWVA
VFRYLSRAELASCMAVCKAWYKWSCDKRLWSGVDVSRCPSLSSQAVQGIIKRQPTSLDLS
WTPVSKKQITLLIHRLPGLKELMIAGCSWSSMSALSTPSLPCLRTLDLRWAEGVKDTQIR
DLVIPPGCDSRSRLRGCVALRLAGLDISDSTLRLILRHMPLLERLDLAHCRDLTDQSICL
LTAAGTNTRNTLTEINLAGCNKLTDGCLAYLKRASGLALLDLRGCKGVTLRGCEGFISDL
SHCVLFCMTEEKLIQRIS
NT seq 4197 nt   +upstreamnt  +downstreamnt
atgggcggctttactgtagcaaaccaagaccaaagtagctacccagaaaacgtgtctcag
caatgcaaagctcagggagtcaagacacagcagaagccaggaggcagactggccccgtcg
accgtccttgaacaggcctactcaatcatggtgcggtcgggcacgcggcggcgctaccat
gacgatggtatctcggacgacgagatcgaggggaagaggacctttgacctggaggagaag
ctgacgagcgagaggttcacctcggacagggtcaaacgcatggaggggaaagacctcaca
tttgagtacatccaaagaggtgggttgagggacccgatcatctttgagaagccagacgga
ctgggcatcaagatgccagatccagacttcagtgtgaacgacgtcaagatatttgtcggc
agcaggcgtatgatggatgtgatggatgtcagtactcagaagggtatagagatgtctatg
gcccagtggagacgttactacgagacgcccccctcccagagggacaaactctacaacgtc
atcagcctggagtttagccacaccaagctggagaacctggtccagaggcctgcatcggtg
gacatcatagactgggtggacaacatgtggcctcggcacctgaaggagagacagatagac
tccaccaactccatcacagacatgcaataccccaaagtgcagaagtactgtctaatgagt
gtgcagggctgctacacagacttccacatagacttcggcggttcctcggtctggtaccac
atactgcggggaggcaaggtgttctggctgatcccgcccacgcctcagaacctggagctg
tatgaggactgggtgttgtcggggaaacagggagacatcttcctgggagacaaggcccag
gactgtcagaggatcgagctgaagcagggctataccttcatgatcccctcaggttggatc
cacgcggtctacactccagtggacaccctggtgtttgggggaaacttcctacatagcttc
aacatccccatgcaactcaacatctacagcatcgaggacaggacacgggtaccagctaag
ttccgttacccgttctattatgagatgtgttggtacgtgctggagagatacctcttcagt
ctgaccaacacctcctacctcacgcctgacttccagaaacactccctgggcatcggtctt
accagagacccctccacctgtgagtcagtcaacgggcacacccaggaggaggatgaagag
gaggctcccccgacccggggctctaagcccggggtgaaggttcacctcacgccctttgag
ctggaggggctgtggaacctgctggggaagctggagtcgttgccctcacagaagaactgt
gtcccggcaggcatacacaatgctcccgctctgctgcatgacatcagggccctgctgaag
aagcacgctaatgacatccccaaactgtcctacactggcaagcccatcgtcaagtggccc
aagaggccgtcgtggtaccagccccctccccctcctcccccggtggctcgtcccaagctg
tctgccacggtggtgaccccgcgaccccagaagcccgcctcctccatgtccgtgctgcgg
cggcggcgcgtgcggtgtaagcgctgcgaggcgtgtgtcaggacggagtgcggggactgt
aacttctgcagggacatgaagaagttcggcgggccagggaaactcaaacagacctgcgtg
ctccgacagtgtctggcgccgggtctgcccctgtcagtggtgtgtgagatctgtgcagag
gggaaccaggagggaggagaggggccagtcttcaccctcaccctcatggagtgttccaac
tgtgcccagatagcccaccccgcctgcctcaaggtaacaggggatggtgtggtgaataca
gatctgcccagctgctgggagtgtcccaaatgtgttctgggaatcaccgacactgagtct
tcgggcaccgatgatgatgacagtggggcgtccgttggcctcggcgcgagccccctctcc
gccaccgccctctcctccacccaggggcctctaggggtctccatggagccaggctctgct
cctgggttgggggacgagggctggggcagggcgatactgttatacccagggctggttccc
aaacccccctcctcctcctggttctccgaggcgccccttccctcccctgggcagctacta
ctagagcagcacggcctcaagcgggcggggagatgggcaagcgggcgtaggaagagggtg
aaggaggacaagaataaaatgttacacgcgaaacgcaagtcttcttcgtatctcgacggc
cgcatcgccaagatctaccgtcgccgtggtcacagccgagacgacgacgacgactcgggc
agcgatgatgatgatgataatgatgaaggctccaggggcggaggaggaggcgcgggacag
aagatgtccgggccacgccctcgcggcagtggctccgcctctcggagaggctatgggact
gggaggcggggcatttggagaggctcctcccacataggggcaggccgcgggagtgggctt
gcccctcactcctccctgaagatgaggcgcggcagaggagggctgggggcgggccgaggg
gatagagagggggggcgtagggagaggggcgggagagtgcgcctccggggaggcaccagg
atgcagaggcgcagggacgagtcagaggatgacgatgatgatgatgacgacgaggaagat
gacgacagcgaggaagatcggcagcatcaccaccggcaacaccgcaggcggaggagaacg
gacgacgaggaagacggcgacgatgatgaggaagacagctcggcccgggacctggagggg
gaggatgaggacatggcggatgaagatgaggatgaggaagacggtgagaacaggtcagac
tctgaaccagagcctcctgtcctcctggtgtctgaccttaacgacgacctcctaaacggc
tcatacctgacagtgaccctacagcgcccccccagggccaaacgccaccccggctccatc
gtgcccaagctggaggccgccatgtctcccagaacccacggcggcggtccaggttacgtc
cagcataaaactctcgggaagacgcggcacaaaaacggcacggtcgccgccggcaacggc
ctggcccagcccgccaagaatccagtcggccggccgcctcgtcaccgtatcaacaatccc
cacggcgacacagcagacagggaaagagagagggacactgcctctcattcctactctgac
tcctcggcctcccccacccctcctccccactcctcccactctccttcctcgctcctgtcg
cttccctcctttaaggatgtaggaaacgagaaaggaggggagaaggaggtgtgggtggcg
gtgttccgttacctgagccgagccgagctggctagctgtatggctgtctgtaaggcctgg
tacaaatggagttgtgacaagcgtctgtggagtggtgtggatgtatcgcggtgtccctcc
ctctcctcccaggccgtgcagggcatcatcaaacgccagcccacctcgctggacctttcc
tggacccccgtgtccaagaaacagatcaccctgctcatacaccgcctgccaggtctgaag
gagttgatgatagcaggctgctcctggtcgtccatgtcagccctgtccacccccagcctg
ccgtgcctccgtaccctggacctgcgctgggcagagggggtcaaagacacccagatcagg
gacctggtcataccaccaggttgtgacagtcggtctcggctgcgtggctgtgtggcgctg
cgtctagccggcctggacatcagtgactccaccctgaggctgattctccgtcacatgccc
ctgctagagcggctggacctggcccactgcagggacctcacggaccagtccatctgcctg
ctcaccgccgccggcacaaacacacgcaacacgctcacggagatcaacctcgcaggttgt
aacaagctgacggacggctgtctggcgtacctgaagagggcgtctggcctggcgctgctg
gacctgcggggctgcaaaggtgtgacgctgcggggctgtgagggcttcatctcggacctc
tctcactgcgtcctgttctgtatgacggaggagaaactcattcagaggatatcgtaa

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