Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419609
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Entry
139419609 CDS
T10872
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139419609
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139419609
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139419609
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
139419609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_5
Ank_3
PKD_channel
LHD_TRPY1
YVC1_C
Motif
Other DBs
NCBI-GeneID:
139419609
NCBI-ProteinID:
XP_071025689
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All DBs
Position
10:47939941..47958478
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AA seq
1039 aa
AA seq
DB search
MMNPMAQLYYKKASYSPYRDRIPLQIVRAEAELSAEERAYLTAVEKGDYAGVKLALQEAE
IYYNINVNCLDPLGRSALLIAIENENLEVMELLLNHGVHVGDALLYAIRKEVVGAVELLL
SHRRSSREKQVPNLMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRC
DCVACVSSSEVDSLRHSRSRLNVYKTLASPSLIALSSEDPILTAFRLGWELKELSKVENE
FRQEYEELSQQCKLFAKDLLDQARSSRELETILNHRDDLSEELDPQDCRDLAKLKLAIKY
HQKEFVSQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFTIGLLFPIFSLVYLLAPRSAL
GLFIKKPFIKFICHTASYLTFLFLLLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIW
AEIKEMWDGGFTEYVHDWWNLMDFAMNSLYLATISLKIVAYFKYNSSRPREEWEMWHPTL
IAEGLFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASDEPNNCKGIRCEKQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIVPSPKSVWYLCVWTHNRLCGQDHPSPDNPRKQENLKEFTERHADNLIQNQHYQ
EVIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGDRKPPLRTYSSS
SEATQQDEANEEEGAGQAQGQSRDQGAKGVSFSTSIAERKSKDSGFSVSALFKSMSGAEG
AVDNKPKCNGLRFSSSPPPSAALTRSSGRLQRFSKSKRDSIRRLGLLFSRMNGHVPEPMS
PPPRMHQPTYSISGGLLRQPTTWPDIQIPPNPPVTHSLFHLGVNLNELPHAPPQALPLGS
PQQANGSDSLLLRPAGHSLPPPGHSLPPLHCASSITASSSRAVLLGSSEDMFEGWIGPCD
ELDSSEGGAEQEDSITTQL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatcccatggcccagctgtactacaagaaggcgagctactcgccgtaccgcgac
cgcatcccgctgcagatcgtgcgggcggaagcggagctgtcagcggaggagcgggcgtac
ctgacggcggtggagaagggcgactatgccggggtgaagctggccctgcaggaggcggag
atctactacaacatcaacgtgaactgcctggacccgctggggcgcagcgcgctgctcatc
gccattgagaacgagaacctggaggtgatggagctgctgctcaaccacggcgtgcacgtg
ggcgacgcactgctctacgccatccgcaaggaggtggtgggcgccgtggagctgctgctg
tcccatcgcaggtccagcagagagaaacaggtgcccaacctgatgatggatacccagttc
tcagagtttacccctgatatcacacccatcatgctggcagctcacaccaacaactatgag
atcatcaagctgctggtccagcgcaaggtgaccatcccccggccccaccagatccgctgc
gactgcgtggcctgtgtgtccagctccgaggtggacagcctgcgtcactcacgctcccgc
ctcaacgtctacaagaccttggccagcccgtccctcatcgccctgtccagcgaagacccc
atcctgactgccttccgcctgggctgggagctgaaggagctaagcaaggtggagaacgag
ttccgtcaggagtacgaggagctgtcccagcagtgtaagctgtttgccaaggacctgctg
gaccaggccaggagctctagagagctggagaccatcctcaaccaccgcgatgacctcagt
gaggagctagacccacaggactgccgtgacctggccaagctcaaactagctatcaagtac
caccagaaagagtttgtgtcccagccaaactgtcagcagcttctggccaccctgtggtac
gacggtttccccgggtggcgcagacgccactgggcggtcaagctggtcacctgcttcacc
atcggcctgctcttccccatcttctccctggtctacctgctggcccctaggagtgccctg
ggcctcttcatcaagaagcccttcatcaagttcatctgccacacagcctcctacctgact
tttcttttcctcctcctcctggcctcccagcacatcgtgagaacagacctgcacgtccag
ggcccgccacccaccgtggtggagtggatgatccttccctgggtgctgggcttcatctgg
gctgagataaaggagatgtgggacggcggcttcactgagtacgtccatgactggtggaac
ctgatggactttgccatgaactctctctacttggccaccatctcactcaaaatagttgct
tacttcaagtacaacagctctcggccgcgggaggagtgggagatgtggcacccgacgctg
atcgccgagggcctgtttgctatcgccaacatcttcagctccctgcgcctcatctccctg
ttcacagccaactcccacctggggcctctgcagatctccctgggacgcatgttgctggac
atcctcaagttcctcttcatctactgcctggtgctgctggccttcgccaatgggctcaac
cagctgtacttctactacgagaccaaggcctcggacgagcccaacaactgcaagggcatc
cgctgtgagaagcagaacaacgccttctctacgctgtttgagacgttacagtccctgttc
tggtcgatattcggcctgctcaacctgtacgtgaccaacgtgaaggcacgccatgagttc
acagagtttgtgggagccaccatgttcggtacctacaacgttatctccctggtggtgctg
ctcaacatgctcatcgccatgatgaacaactcctatcagctcatcgctgatcatgcggac
attgaatggaagtttgcccgcaccaagctgtggatgagttattttgacgagggaggaact
ctccctccgcccttcaacatcgtccccagccccaagtcagtgtggtacctgtgtgtgtgg
acgcacaaccgcctgtgtggacaggaccatcccagtcctgacaacccgaggaaacaggag
aacttaaaggagttcacggagcggcatgctgacaacctgattcagaaccagcattatcag
gaggtgatcaggaacctggtgaagaggtatgtagcagctatgatccgcagtgctaagaca
gacgagggtctgacagaggagaattttaaggagctcaagcaggacatctccagtttccgc
tacgaggtgttagacctgttgggggacaggaagcctccgttgaggacctactcatccagc
agtgaggctacccagcaggacgaggccaacgaggaagaaggggctggacaggcccagggt
cagtccagggaccaaggggctaagggggtatccttcagcacgtctatcgctgagaggaag
agcaaggactctgggttcagcgtctccgccctctttaagtccatgtcaggggcagagggg
gcagtggacaacaaaccaaagtgcaacgggctcaggttctcctcctcccccccgccctct
gctgcgttaacccgcagtagtggccggctgcaacgcttctccaagtccaaaagagactcc
atcaggcggctgggcctgctcttctcccgcatgaatggacacgtcccagagcccatgtcc
cctcctcccaggatgcaccagcccacctacagcatctcaggcggtctgcttcggcagccc
acaacctggccggacatccagatcccccccaatcccccggttacacacagcctgttccac
ctgggggtgaacctgaacgagctaccacatgcccctccccaggccctgccattggggtca
ccccagcaggctaacggaagtgacagtcttctcctgcgacccgcgggccactccttacca
ccgccaggccactccctgccacccctgcactgtgcttccagcatcacggcctccagctcc
cgggctgtcctcctgggctctagtgaggacatgtttgagggctggataggaccttgtgac
gagctggactcctctgaggggggggctgagcaggaggactccatcacaacacagctttag
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