Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420312
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Entry
139420312 CDS
T10872
Name
(RefSeq) tumor necrosis factor receptor superfamily member 11A
KO
K05147
tumor necrosis factor receptor superfamily member 11A
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
139420312
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
ocla04050
]
139420312
04090 CD molecules [BR:
ocla04090
]
139420312
Cytokine receptors [BR:
ocla04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
139420312
CD molecules [BR:
ocla04090
]
Proteins
139420312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNFR_c6
Motif
Other DBs
NCBI-GeneID:
139420312
NCBI-ProteinID:
XP_071026360
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All DBs
Position
11:complement(17842973..17862321)
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AA seq
665 aa
AA seq
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MRVHFPTSWIFQGWVTHLVLNLCAQRALSRPTCTQQQYLKDKRCCRRCEPGSYVFAECSG
YSDTKCRQCGRDEYQPDWTNETKCLPQKFCDTGKGFNRERPSNPQAAVPCQCQPGLECSP
INCEFCEKIPTCGPGYGLETDTEAGRRTCVACKRGYFSPNTSIEPCRQWTNCKGLGKSDK
KTGSDQTDAVCGPHLSGSSTSSWVLVCILSVITVLCLLILLLFCYKDKLKLLSVNLRLCV
QNLKRTRIQQETLAPLYHSGGEGGGVGGQNCTLCEKTCLIVLADTPSETLHTCPTAIPGD
RVKLPPIKEMKEERREEEDEGMGSEGSGEAEEVSEEAVCEEGVSEGVCVSPLWAGSCVCV
LSVREPLEVGENEDCSQAVNPGTLGTCSCGGDGESRDGKKDERKDGGRERAKIVEGSQGK
SSEMSCNTSPYSLSPTSSPLSPVMPSCDLYLPLTPARSEVKAQLIDSSQRKVDGLYRLNS
SISSTPTTDTTPTSTSITSPEPSVTVGDQQSKLSSEASGSEPNQGLSWRGSGGNKLLSGG
SELECAPDCIQSQLAEPALTSGQVTGNNNTTFISSGQVMNFSADVIVVYVSQTSLGNEEE
GPDDAFGIPVQEQANERAPLFQSSASSKSVGHSPPPSPRNSITHNPPQQDDNLPVQEVTD
ELPSD
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagagttcacttccctaccagttggatatttcaaggctgggtcacccatctggttctc
aatctgtgcgcacagagagccctctccagacccacctgtacccagcagcagtacctcaaa
gacaagagatgctgcaggaggtgtgaaccagggtcctatgtgtttgcagagtgttctggg
tactctgacaccaagtgtcgtcagtgtggtcgtgatgagtaccagcctgactggaccaac
gagaccaagtgtctgccacagaagttctgtgacacaggtaaaggttttaatcgtgagagg
cccagtaacccccaggctgcggtaccctgtcaatgtcaacctggtctagagtgttctcct
atcaactgtgagttctgtgagaagattcctacctgtggaccaggatatggactggagact
gacactgaggcgggcaggagaacttgtgttgcgtgcaagagaggatatttctctcccaac
acctctatagaaccatgcagacagtggaccaattgtaaaggcctggggaagagtgacaaa
aagaccggtagcgaccagactgatgctgtctgtggaccccatctctctggttcctctacc
tcctcctgggtcctagtgtgtattctgtcagtcatcactgtcctctgtctcctcatcctc
ctgctcttctgctacaaggacaaactcaaactactctcagtgaatttgcgattatgtgtc
cagaatctgaaaaggacccggatacagcaggagactctggcccctctctaccacagtggg
ggtgaaggaggtggggtaggggggcagaactgcaccctgtgtgagaaaacctgtctgatt
gtccttgctgacacgccctcagaaactctacacacctgtcctacagccatacctggtgac
cgggtcaaactaccacccattaaagagatgaaggaggagaggagggaggaggaggatgag
gggatgggaagtgaggggtcaggggaggcggaggaggtttctgaggaggctgtgtgtgag
gagggtgtatcagagggtgtgtgtgtgtctccactgtgggctggctcctgtgtgtgtgtg
ttgtctgtgagggaacctttagaggtaggagagaatgaagactgtagtcaggccgtcaac
cctggaaccctcgggacctgctcctgtggaggagatggggagagcagggatggaaagaag
gatgaaaggaaagatggagggagggagagggccaagatagttgagggctctcaagggaag
agctctgagatgagctgtaatacctccccctactccctttctcccacctcctcccccctt
tcccccgtcatgccgtcatgtgacctctacctgccactgaccccagccaggtcagaggtc
aaagctcagctgattgacagctcacagaggaaagtggatgggctatacagactgaactct
agcataagctccacacccaccacagacaccacacccacttcaacctccataacctctcct
gaaccctctgtgaccgtgggagaccagcagtccaagctaagctctgaggcctccggcagt
gagccaaaccagggactttcctggaggggcagtggaggaaacaagctcttatctgggggc
tcggagctggagtgtgcccctgattgtatccagagccaacttgcggaaccagcactcacc
tcaggtcaggtgacggggaacaataacaccaccttcatctccagcggtcaggttatgaac
ttcagcgctgatgtcatcgtcgtctacgtcagccagacgtcgctaggcaacgaggaggaa
gggccagatgatgcattcggaatccccgtccaggaacaggccaatgaaagagctccgttg
ttccagagttctgcctcctccaaaagtgtcggtcattcacctccaccttctccaaggaat
tccattacccataaccccccacagcaggatgacaacctgccagttcaggaagtgactgat
gagttgcccagtgactga
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