KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422236
Entry
139422236         CDS       T10872                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03420  Nucleotide excision repair
ocla04110  Cell cycle
ocla04114  Oocyte meiosis
ocla04120  Ubiquitin mediated proteolysis
ocla04141  Protein processing in endoplasmic reticulum
ocla04310  Wnt signaling pathway
ocla04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    139422236
   04120 Ubiquitin mediated proteolysis
    139422236
  09124 Replication and repair
   03420 Nucleotide excision repair
    139422236
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    139422236
   04350 TGF-beta signaling pathway
    139422236
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    139422236
   04114 Oocyte meiosis
    139422236
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocla04121]
    139422236
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139422236
Enzymes [BR:ocla01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     139422236
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   139422236
  Multi subunit type E3
   SCF complex
    Ring finger protein
     139422236
   Cul2 complex
     139422236
   Cul3 complex
     139422236
   Cul4 complex
     139422236
   Cul7 complex
     139422236
   Cul8 complex
     139422236
   Cul9 complex
     139422236
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      139422236
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      139422236
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11 Arif-1 DUF8003 PHD_NSD
Other DBs
NCBI-GeneID: 139422236
NCBI-ProteinID: XP_071029510
LinkDB
Position
12:complement(76262866..76265898)
AA seq 108 aa
MAAAMDVDTPSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
NT seq 327 nt   +upstreamnt  +downstreamnt
atggcggcagcgatggatgttgataccccaagcgccacgaatagtggagcaagcaagaaa
cgttttgaagtgaagaagtggaatgcagtggcactttgggcctgggacattgtggtggac
aattgtgccatctgtaggaatcacattatggatctctgcatagagtgccaggctaaccag
gcctctgccacatcagaggagtgcaccgtagcctggggagtctgcaatcatgcattccat
ttccactgtatctcccgttggttgaagaccaggcaggtgtgccccctagacaacagggag
tgggagtttcagaaatatggacactag

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