Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423073
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Entry
139423073 CDS
T10872
Name
(RefSeq) collagenase 3-like
KO
K07994
matrix metalloproteinase-13 (collagenase 3) [EC:3.4.24.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139423073
Peptidases and inhibitors [BR:
ocla01002
]
Metallo peptidases
Family M10
139423073
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GFIT
Motif
Pfam:
Peptidase_M10
Hemopexin
PG_binding_1
Reprolysin_4
Reprolysin_3
Reprolysin_5
DUF4953
EarP
Peptidase_M54
Motif
Other DBs
NCBI-GeneID:
139423073
NCBI-ProteinID:
XP_071030800
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Position
12:complement(32179769..32188291)
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AA seq
475 aa
AA seq
DB search
MARRRGAGSPLGTSWTQASSLSSTAGTPVNQVLVNQTYLKKFFNLTEETGPMFRRGPSQR
SRKVSEMQRFFGLKVTGTLDAETVKMMKKPRCGLPDVQLGRFTTFDNLKWPTNQLTYRIE
NYTPDMSVAEVDNSIERALQVWAKVSPLRFTRIYRGTADIMISFGNRNHGDFYPFDGPEG
TLAHAFSPGADIGGDAHFDDDEYFTFSSTRGYNLFLVAAHEFGHSLGLSHSNDPGALMFP
VYSYTEPSTFSLPRDDVTGIQYIYGPNPDVNPNPDKPDPTPVSTPDACDPTLVLDAVTTL
RGEKMFFKGRFFWRIYPQSSKPHQNLIKTFWPELPDNINAAYESQLSDRVFLFKDHQVWA
LYGYDIVPGYPRNLKSLGLPRTVKKVDAALYDEHSRKTLFFVGDNYYSYDEEMKSMDRGF
PKRVDEQFPGMTSKVTAAFQVRGFTYLYSGPYVFEYNMRTRRQFRVLGNNYFLPC
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaggagaggtgctggatccccgctagggacatcctggacccaggcatcatcg
ctgagttccaccgctggcaccccggtcaatcaggtattggtcaatcagacatacctgaag
aagttctttaacctgacggaggagacgggtccaatgttcagacgggggcccagccagcgg
agcaggaaagtcagcgagatgcagaggttctttggcctcaaggtgacaggaaccttggac
gctgagaccgtaaagatgatgaagaagccacgctgcgggttacctgacgtccaactcggc
cgattcaccaccttcgataaccttaagtggccaacaaaccagcttacctacagaattgag
aactacactcctgacatgtctgtggctgaggtggacaactccatagagagagcactacag
gtgtgggccaaggtctcccccctaaggttcacccgtatctaccgcggcaccgctgacatc
atgatctccttcggcaacagaaatcatggtgatttctaccccttcgatggccctgaaggc
accctggcccatgccttctcccccggcgctgacattggaggagatgctcattttgatgat
gacgagtacttcacattcagctcaaccagagggtacaacctgttcttggtggctgcccat
gagtttggccattccctgggtctcagccactccaacgaccctggagcgctgatgttccca
gtgtacagctacacagagcccagcaccttctctctgcctcgtgatgatgtcaccggtatc
cagtacatatacggcccaaacccagatgttaaccccaacccagataagcccgaccctaca
cctgtttccacccctgatgcctgtgaccccaccctggtcctggatgctgtcaccactctg
cgtggggagaagatgttcttcaagggcaggttcttctggcgtatttaccctcagagcagc
aaaccacatcagaacctcatcaagactttctggcctgaactccccgacaacatcaatgct
gcttatgagagccagctatctgacagagtgttcctctttaaagatcatcaggtctgggct
ctctatggctatgacatcgtccccggctatcccagaaacctgaagagcttgggtctgccc
aggaccgtgaagaaagttgacgccgccttgtacgatgaacattctcgcaagaccttgttc
tttgttggcgacaactactacagttacgatgaggaaatgaaaagcatggacagaggtttc
cccaagcgtgtggatgaacagttcccaggcatgacaagcaaagtgactgcagccttccaa
gtccgaggcttcacctacctctatagtggcccctacgtatttgaatacaacatgaggacc
agaagacagttccgcgtgctaggaaacaactacttcctgccttgttag
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