Afipia carboxidovorans OM4: OCA4_c01050
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Entry
OCA4_c01050 CDS
T01967
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OCA4_c01050 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c01050 (nth)
Enzymes [BR:
oco01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
OCA4_c01050 (nth)
DNA repair and recombination proteins [BR:
oco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OCA4_c01050 (nth)
Prokaryotic type
OCA4_c01050 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_8
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AEI01263
LinkDB
All DBs
Position
complement(118810..119559)
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AA seq
249 aa
AA seq
DB search
MIKTAAKPATKARVRKTAAKAVPAKKRASATRPKRWSEAEVHEAFSRFRAANPEPKGELE
HLNNFTLLVAVVLSAQATDAGVNKATRSLFPVADTPEKMLALGEDGLREHIKTIGLYRAK
AKNVIALSEQLIANHDGEVPRTREELEALPGVGRKTANVVLNIAFGEKTIAVDTHLFRVG
NRTYLAPGDTPLAVEMELLRVVPDEFMRHAHHWLILHGRYTCIARKPRCEVCIINDLCRW
PEKTVFMNP
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaagacagcggcgaagccggctaccaaggctcgcgttcgcaagacggctgcgaag
gctgttccggccaagaaacgagcgtccgccacgcgacccaaacgctggagcgaggcggaa
gttcatgaagccttctcacggtttcgcgccgcgaatcccgagcccaagggtgagcttgag
catctcaacaatttcacgctgctggttgcggtggtgctgtcggcgcaggcaacggatgcc
ggcgtcaacaaggcaacgcgcagcctgtttccggtcgccgacacgccggagaaaatgctg
gcgctcggcgaggatgggcttcgcgagcacatcaagaccatcggactttatcgcgccaag
gcgaagaacgtcatcgcactgtccgaacagttgatcgccaatcatgatggcgaggtgccg
cgcacgcgcgaggagctggaagcgttgccgggcgtcggccgcaagacggcgaatgtcgtg
ctgaacatcgcgttcggtgagaagacgattgcggtcgacacgcatctcttccgcgtcggc
aaccgcacctatctcgcgcccggcgacacgccgctcgcggtcgagatggagctgctgcgc
gtggtgccggacgagttcatgcgccacgcccatcactggctgattctgcacgggcgctac
acctgtatcgcgcgcaagccgcgctgcgaggtgtgcatcatcaacgatctgtgccgctgg
ccggagaagacggtttttatgaatccgtaa
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