Ornithinimicrobium cryptoxanthini: NF557_13345
Help
Entry
NF557_13345 CDS
T08994
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03030
DNA replication
ocp03410
Base excision repair
ocp03420
Nucleotide excision repair
ocp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF557_13345 (ligA)
03410 Base excision repair
NF557_13345 (ligA)
03420 Nucleotide excision repair
NF557_13345 (ligA)
03430 Mismatch repair
NF557_13345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocp03032
]
NF557_13345 (ligA)
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_13345 (ligA)
Enzymes [BR:
ocp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NF557_13345 (ligA)
DNA replication proteins [BR:
ocp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NF557_13345 (ligA)
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NF557_13345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NF557_13345 (ligA)
MMR (mismatch excision repair)
DNA ligase
NF557_13345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NF557_13345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
USQ75588
UniProt:
A0ABY4YGX1
LinkDB
All DBs
Position
complement(2892687..2894798)
Genome browser
AA seq
703 aa
AA seq
DB search
MSETAPEDVRHEWTELAEQIREHQFAYYVKDAPTISDGEFDVLLRRLEAIEEEWPELRVP
ESPTQLVGGSFSTEFAAVDHVERMLSLDNAFSIEEVSAWADRVEREAGGVDVHYLCELKI
DGLAVNLLYEKGRLVRAATRGDGRTGEDVTLNVRTIQGIPHTLVAPEDQEGAAVPIPDLL
EVRGEVYFPVTAFEELNASLVEAGKAPFANPRNTAAGSLRQKDPRVTASRGLRMLVHGIG
ARTGFEMTRQSQAYELLGAWGFPVSARAKVVDDLADVEEFITYYGDHRHDAAEHELDGIV
VKVDEVSVQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPYGVMEPVKV
AGSTVEQATLHNGYEVERKGVLIGDTVVLRKAGDVIPEIVGPVAELRDGSEVAFVMPTNC
PSCGTTLAEQKEGDKDIRCPNAQSCPAQLRERLFSLAGRGAFDIEALGGEGVNALLDAGV
INNESTLFRLTAEDIARVPLYTRAAKKTDPPESVVDGRVLSANGTKLVANLEQAKSQPLW
RVLVSLSIRHVGPTAARALATEFGSMDAIREAGVEQLAATEGVGGIIAQSVVDWFEVDWH
RAIVEEWAADGVRMADERDESVIRNLEGLTVVVTGSLEGFSRDESKEAIVSRGGKAAGSV
SKKTDYVVVGENAGSKADKAEELGVPILDEAGFRRLLETGSPD
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagacagcaccggaggacgtccggcacgagtggaccgagctggccgagcagatc
agggagcaccagttcgcctactacgtcaaggatgccccgacgatcagcgacggtgagttc
gacgtgctgctcaggcgtctggaggcgatcgaggaggagtggcccgagctgcgggtgccg
gagtcaccgacccagctggtcggcgggtccttctcgacggagtttgcggcggtcgatcac
gtcgagcggatgctcagtctggacaacgccttctccatcgaggaggtgtcggcctgggcg
gaccgcgtcgagcgcgaggccgggggcgtcgacgtgcactacctgtgcgagctcaagatc
gacggtctcgcggtcaacctgctctatgagaaggggcgcctggtgcgcgcggcgacccgc
ggcgatggccgcaccggtgaggacgtcaccctcaacgtgcgcacgatccaggggatcccg
cacacgctggtcgcgccggaggaccaagagggtgctgcggtgccgatcccggacctgctg
gaggtgcgcggcgaggtctacttcccggtcacggccttcgaggagctcaacgcctccctg
gtcgaggcgggcaaggcgccgtttgccaacccgcgcaacaccgcggcagggtcgttgcgg
cagaaggaccctcgggtgaccgcctcgcgcggtctgcggatgctggtgcacggcatcggc
gcgcgcaccgggttcgagatgacacggcagtcgcaggcctacgagctgctcggcgcctgg
ggcttcccggtgtctgcccgggccaaggtcgtggacgacctcgccgacgtggaggagttc
atcacctactacggcgatcaccgccacgacgctgccgagcacgagcttgacgggatcgtc
gtcaaggtcgacgaggtcagcgtgcagcgccggctcggctcaacctcgcgcgcgccgcgg
tgggcgatcgcctacaagtatccgcccgaggaggtcaccaccaagctgctcgacatcagg
gtcaacgtggggcgcacggggcgcgtgacgccatacggcgtgatggagccggtgaaggtg
gccgggtcgaccgtcgagcaggcgacgttgcacaacggctatgaggtggagcgcaagggc
gtgctgatcggtgacacggtggtgctgaggaaggccggcgacgtgatcccggagatcgtc
ggtccggtcgctgagctgcgcgacgggagcgaggtggcgttcgtgatgccgacgaactgc
ccctcgtgcggcaccacgctggccgagcagaaggagggcgacaaggacatccgctgcccc
aatgcgcagagctgcccggcccagctgcgcgagcggttgttcagtctggccgggcgcggc
gccttcgacatcgaggcgctcggtggggagggagtcaacgccctgctggacgccggcgtg
atcaacaacgagtcgaccctgttccgcctgactgccgaggacatcgcgcgcgtgccgctc
tacacccgcgccgccaagaagacggacccgcctgagtcggtggtggacgggcgggtgctc
tcggcgaacggcacgaagctggtggccaacctggagcaggccaagagccagccgttgtgg
cgggtgctggtgtcgctgtcgatccggcacgtcgggccgaccgcggcgcgcgccctggcg
accgagttcggctcgatggacgccatccgcgaggcgggggtcgagcagctggcggccacg
gagggtgtcggcgggatcatcgcccagtcggtcgtcgactggtttgaggtggactggcac
cgcgcgatcgtggaggagtgggcagccgacggggtccggatggccgacgagcgtgatgag
tcggtgatccgcaacctggaggggctgactgtggtggtcaccggctccctggagggcttc
agccgagacgagtccaaggaggcgatcgtctcgcgcggaggcaaggcagccggctcggtg
agcaagaagaccgactatgtcgtcgtgggcgagaacgccggctccaaggccgacaaggcc
gaggagctgggcgtgccgatcctggacgaggctggcttccggcggctgctggagaccggt
tcaccggactga
DBGET
integrated database retrieval system
