Oryctolagus cuniculus (rabbit): 100347707
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Entry
100347707 CDS
T03373
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04064
NF-kappa B signaling pathway
ocu04622
RIG-I-like receptor signaling pathway
ocu04623
Cytosolic DNA-sensing pathway
ocu05160
Hepatitis C
ocu05161
Hepatitis B
ocu05162
Measles
ocu05164
Influenza A
ocu05168
Herpes simplex virus 1 infection
ocu05169
Epstein-Barr virus infection
ocu05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
100347707 (RIGI)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
100347707 (RIGI)
04623 Cytosolic DNA-sensing pathway
100347707 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
100347707 (RIGI)
05160 Hepatitis C
100347707 (RIGI)
05171 Coronavirus disease - COVID-19
100347707 (RIGI)
05164 Influenza A
100347707 (RIGI)
05162 Measles
100347707 (RIGI)
05168 Herpes simplex virus 1 infection
100347707 (RIGI)
05169 Epstein-Barr virus infection
100347707 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocu04054
]
100347707 (RIGI)
Enzymes [BR:
ocu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100347707 (RIGI)
Pattern recognition receptors [BR:
ocu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
100347707 (RIGI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_25
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
100347707
NCBI-ProteinID:
XP_002708086
Ensembl:
ENSOCUG00000004710
UniProt:
G1SMD2
LinkDB
All DBs
Position
1:35070120..35136303
Genome browser
AA seq
926 aa
AA seq
DB search
MTAEERRNLQAFSDYVKRILDPTHILSYMNSWLGEDEVQYIQAEKNNKGPMEAASLFLKY
LLQLKEEGWFRGFLDALNNAGYSGLYEAIANWNFQKIEKLEEYRALLKRLQPAFKDRIDP
TCILPEMSDCIISQEYEEIMQVCSNKGIMAGAEKMAECLLRSDKENWPKTLKLALDNDNN
SFSELWMVEEDAKDVEAEDLEEDDMGTSSIHIVYQEDPQLENLSQNSCTPAEVSRAKLCS
QLKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKTFPQGQKGKVVFFANH
VPVYEQQKSVFSEYFERLGYSVAGIAGATVENVPVQQIVENNDIIVLTPQILVNNLKDGT
IPSLSVFTLMIFDECHNTCKQHPYNKIMFYYLDQKLGGSSDPLPQVVGMTASVGVGDAKN
TDEAVEYICKLCASLDASVIATVKENLEELQEIVYTPQKISRRVESRTTNGFKRIISQLM
RETESLAKDVFEELENLSQIQNREFGTQKYEQWIVEVHKACRTFQLPDKDEESRICKALY
LYTSHLRKYNDALIISEHAQMKDALNYLNNFFKDVRAAGFDETEQDLTRRFEGKVQELET
VSMDPSNENPKLKDLYLILQEEYHVNPETKTILFVKTRALVDAIKKWIEENSKLSFLKPG
ILTGRGKTSQTTGMTLPAQKCVLDAFRSNGDHNILIATSVADEGIDIAQCNLVILYEYVG
NVIKMIQTRGRGRAKGSKCLLLTSNADVIEKENINMYKEKMMNESILRLQTCDEAKFKKK
LLCIQTGEKIIRDNQQNFKPKLDKQNKKLLCAKCKALACYTSEIRMVKDSHYTVVGETFK
KCFVTRPHPRPKSCGDFDKIGKIFCARQDCSHDWGIRAKVNAFEIPLIKIQSFVVEDTVT
GKQMCPSKWKDFNFEKIPFNPEELSE
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaggagcggaggaacctgcaagccttcagcgactatgtcaagaggattctg
gaccctacccacatcctgagctacatgaactcctggcttggggaggatgaagtgcagtat
attcaggctgagaaaaacaacaagggtccaatggaggctgcctcactttttctcaagtac
ctgctgcagctcaaggaagaaggctggttccgtggctttttggatgccctaaacaatgca
ggttattctgggctttatgaagccattgcaaattggaatttccaaaaaattgaaaagttg
gaggaatacagagcacttttgaaacgtttacaaccagcatttaaagacagaattgatcca
acatgtatccttcctgaaatgtctgactgtataattagtcaggaatatgaagaaattatg
caggtttgctccaataaggggataatggcaggtgcagagaaaatggctgaatgccttctc
agatcagacaaggaaaactggcccaaaactttaaaacttgctttggataatgataacaac
tcattcagtgaactttggatggtagaggaagatgccaaagatgttgaagctgaagatctt
gaggaggacgacatgggaacttccagcatacatattgtctaccaggaagatccacagttg
gagaatctcagtcagaattcatgtacacctgcagaagtatctcgcgctaaattatgcagc
caactgaaaccaagaaattaccagctagagcttgctctgcctgctatgaagggaaaaaac
acaataatatgtgctcctactggttgtggaaaaacctttgtttcacttcttatatgtgaa
catcatcttaaaacatttccacaaggacaaaaagggaaggtggtgttttttgctaatcac
gtccctgtgtatgaacagcagaaatctgtgttctcagagtattttgaaagacttgggtac
agtgtggcaggcattgctggagcaacagttgagaatgtccccgtgcaacaaatcgtggag
aacaatgacatcattgttttaacgccacagatccttgtgaacaatcttaaagacggaact
attccatcactctctgtcttcactttgatgatatttgatgaatgtcacaatacttgtaaa
caacacccatacaataagatcatgttctattatctggatcagaaacttggaggatcttct
gacccactgcctcaggtcgttgggatgactgcctctgttggtgttggggatgccaaaaac
acagatgaagccgtggaatatatctgcaaactctgtgcttctcttgatgcatcagtaata
gcaacggtcaaagagaatctggaagaactgcaagaaattgtttatacgccccagaaaatt
tccaggagagtagaatcacggactaccaatggatttaaacgcatcatatctcagctgatg
agagagacagaaagtctggcaaaggatgtctttgaagaactggaaaacttatctcaaatc
cagaacagggaatttggaacacagaagtacgaacagtggattgtcgaagtccataaagcg
tgcaggacgtttcagctgccagacaaagatgaagagagcaggatctgtaaagcgctatat
ttgtacacttcccatttgcggaagtacaacgatgccctcattatcagtgagcacgcacaa
atgaaagatgccctgaattacttaaacaatttcttcaaagatgtccgagcagcaggattt
gatgagactgaacaagatcttacccggagatttgaaggaaaggtgcaggaactagaaaca
gtttccatggatcccagcaatgagaatcctaaactcaaagacctgtacctcattttacaa
gaggagtaccacgtcaatccggagaccaaaaccattctgttcgtgaaaaccagagccctt
gtggacgctataaagaagtggattgaggaaaattctaaactcagctttctaaagcctggc
atattgactggacgtggcaaaactagtcagactacaggaatgacccttccagcacagaaa
tgtgtactggatgcattcagaagcaatggagaccacaatattttgattgccacctcagtt
gctgatgaaggcattgacattgctcagtgcaatctggtcatcctgtatgagtacgtgggc
aatgtcatcaaaatgatccagaccagaggcagaggaagagcaaaagggagcaagtgcctg
cttttgactagcaatgccgatgtaattgaaaaagaaaatataaacatgtacaaggagaaa
atgatgaatgaatccattttaagacttcagacatgcgatgaagcaaaatttaaaaaaaag
cttctctgtatacagactggtgaaaaaatcatcagagataatcaacaaaacttcaaacct
aaacttgataagcaaaataagaaactgctgtgtgcaaagtgcaaagccttggcatgttac
acatctgagataagaatggtaaaggattcccattacactgtggttggagagacttttaag
aagtgctttgtgaccagaccacaccccagaccaaagagttgtggggattttgacaagata
gggaagatattctgtgccagacaagactgcagccatgactggggaatccgtgcaaaggtc
aatgcttttgagattccattaatcaagattcagagttttgtggtggaagacactgtgact
ggaaaacagatgtgtccctcaaagtggaaggactttaattttgagaagataccatttaat
cctgaagaactgtctgaatga
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