Oryctolagus cuniculus (rabbit): 100348571
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Entry
100348571 CDS
T03373
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X6
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocu03036
]
100348571
03400 DNA repair and recombination proteins [BR:
ocu03400
]
100348571
Chromosome and associated proteins [BR:
ocu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100348571
DNA repair and recombination proteins [BR:
ocu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100348571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
Motif
Other DBs
NCBI-GeneID:
100348571
NCBI-ProteinID:
XP_008259342
Ensembl:
ENSOCUG00000000020
LinkDB
All DBs
Position
9:56760646..56926364
Genome browser
AA seq
2005 aa
AA seq
DB search
MAAAGDGGSGGPSLGTGEDGGGDGHRTVYLFDRREKESELGDRALQIAEHSDYAGFRASV
CQTLGISPEEKFVITTTSRKEITCDNFDEIVKDGVTLYLLHSVNQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATARNVGIRKIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPAGSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
DDERFLHNLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
EVRMSKEVGPFSNIDIEISMFEKGKAPKIVNLRDIQDDMQTLYVNKAADSFEFKAHVEGD
GVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYS
AIEWDGKMYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IKTVPIAKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDHPFRVGVP
FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGSVNSCQGK
NFNLKVILPGLKEDSQILKMRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNL
TAQPKLIVHCKFSGAPNLPVYTVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD
VTPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWVAGDIMHNLIFQMYDEGERE
INITSTLAEKIKVNWTPEINKEHLLQGLLPDVQVPTSIKDMRYCQVSFQDDHVSLESAFT
VRPLPDEPKHLKCELKGGKTVQMGQELLGEIVIIITDQYGNQIPAFSPNSLSALSIAGVG
LDSSNLKTTFQESTQSISVRGIRFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI
DWPELKESIPVINGRELQNPLTVQLCDQWDNPAPVPQVKISLIKPNNLKLMPSNQQHKTD
EKGRANLGVFTVLAPRGEHIMQIKAVYNKCTIEGPTIKLMILPDPEKPIRLNVKYDRDAS
FLAGGVFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDND
KEEGCFYFRDKAIPNKVGTYCIQFGFMMDKANTLNSEQVIIEVLPNQPVKLVPENQPATP
AVSNVRSVLSRTLVRDLCLNVTDEYSNHTGLDLVGTVIATIKGSNEEDNDTPLFIGKVRT
LEFPFVNGSAEITSLVLAENSPGRDSTEYFIVFEPRLSRLSRTLEPYILPFMFYNDVKKQ
QQMAALTKEKDQLSKSIIMYRNLFDASKQLLDEMKCQVEEAKLKEAQLRNELKIHNIDIP
AAQQIPHIEALLKKKMSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKNIPDWKRPLPHFRNGKLY
FKPIGNPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKNTHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLIIGEQIELLQQYRSAVCKLG
TVNEDLNGQLEYLHTPDMKKKKQELDEQEKNLKIIEQKLGMTPTRKCNDSLRHSTKVEVV
DCPIPPKRMRREATRQNRIITKTDV
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggtgatggcgggtctggcgggccctcgctggggactggggaggacggc
ggaggcgacggccacaggacggtgtacttgtttgaccgacgcgagaaagagtccgagctc
ggagaccgggcgctgcagatcgcggagcactcggactacgcgggcttccgcgcgtcggtg
tgtcagacacttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaa
gaaattacctgtgataattttgatgaaattgttaaagatggagtcactctgtacttgcta
cattcagttaatcagttactactaactgctacaaaggaaagaattgacttcctacctcac
tatgatacactggttaaaagtggcatgtatgaatattatgcaagtgaaggacagaatcct
ttgccatttgctcttgcggaattaattgacaattcattgtctgctactgctcgtaacgtt
ggtattagaaaaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttatcaaaatttacaaggcaaggtgacttcgaaagtgaccattcaggatatgttcgt
ccagtaccagtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaag
caggctgttttctttgttggacagtcagccagaatgataagcaaacctgcaggctcacag
gatgttcatgagcttgtgctttctaaagaagattttgagaagaaggagaaaaataaagaa
gcaatatatagtggatatattagaaatagaaagccatctgattctgttcacattacaaat
gatgatgaaagatttctacataatctcatcatagaggagaaagaaaaagatagttttact
gctgtggttatcacaggggtacagccagagcacatacagtacttgaaaaactatttccat
ctttggacgcgacagttagcgcatatttatcattactatattcatggaccaaaaggaaat
gaagttcgtatgtcaaaagaagttggacctttcagcaacattgatattgaaatttctatg
tttgaaaaagggaaggcaccaaagattgtcaacctaagggatattcaagatgacatgcag
acgttgtatgtaaacaaagcagctgatagttttgaattcaaggctcatgttgaaggagat
ggtgtagtggaagggattatccgatatcatccattcttatatgataaagaaacttaccct
gatgatccatgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcata
cttgagaaagcagcaagagggaaaaggcctatttttgaatgtttttggaatggacgatta
ataccatatacatcagtagaagactttgactggtgtacccctcccaagaagagagggctt
gcaccaattgaatgctacaatagaatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaactgacttttatggatcttgagctaaaactgaaagacaagaacacc
ctttttacaaggattttgaatggacaggagcagcgaatgaaaattgatagagaatttgct
ttgtggctaaaggactgtcatgaaaagtatgacaaacagatcaaatttacactttttaaa
ggaataattacacgtcctgatcttccttctaaaaagcaaggcccctgggcaacatactca
gcaatagagtgggatggaaaaatgtacaaagcaggacagctggtcaagacaatcaagaca
ctccccctcttttatggaagtatagtaagattttttctttatggtgatcatgatggagaa
gtatacgctacgggaggagaagttcaaatagcaatggagcctcaggcattgtatgatgaa
ataaagaccgtgccaattgcaaagctggatagaacagttgctgagaagactgttaaaaag
tatgtagaagatgaaatggcaaggcttcctgatagattgtcagtaacatggcctgaaggt
gatgaattgttgcctaatgagattaggcctgctggaacccccattggtgcattaagaatt
gaaatactgaataaaaaaggggaagcaatgcaaaagcttccaggaacaagtcatggaggg
tcaaagaaactcctggttgaactcaaagttatattacacacttcaagtggaaataaggaa
atcatttcacacataagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aatattcaaaagttggggaattacacattgaaattacaagttgtattgaatgaaagtaat
gcagatacttacgcaggaagaccacttccatctaaagcaattaaattttctgtgaaagag
ggtaagccagaaaaattttcctttggtcttctggatcatccttttcgtgttggagttcca
ttcaatattcctctggaatttcaggatgaatttggtcatactagtcaactagtaactgat
attcagccagttcttgaagcaagtggtttatctttacattatgaagaaataaccaaaggg
ccaaattgcgtaattcgaggtgttacagcaaagggatctgtaaactcttgtcaaggcaag
aattttaatctgaaggttattctaccaggtttaaaagaagactcacagattttgaaaatg
agattactgcctggtccccctcgtcgattgaaagtgaaacctgattctgaaattttagtt
atagaaaatggaacagctttcccatttcaagtggaagttttagatgaatcagacaaccta
acagcacaaccaaagttgattgttcattgtaagttttcaggtgctccaaaccttccagtc
tacactgttgattgcagtagttctggaaccagcattttaacaggatctgccattcaagtt
cagaatattaaaaaagaccagacacttaaagcaagaattgaaatacctagttgtaaggat
gtcacgcctgtggaaaagacaatcaagttgcttcccagtagccatgttgcaagattacag
atattcagtgtagaagggcagaaggcaatccagatcaaacaccaagatgaagttaattgg
gtagcaggcgacattatgcataatcttattttccaaatgtatgatgaaggagaaagagaa
attaatataacatcaactttagcagaaaaaattaaagttaactggactcctgagattaac
aaagaacacttgctacaaggtctgctgcctgatgtgcaggtaccaacttctataaaagat
atgcgttattgccaagtttcatttcaagatgatcatgtgtctttggaaagtgcatttaca
gtaagaccactccctgatgaacctaaacatttaaaatgtgaattaaaaggaggaaaaaca
gtacagatgggccaagagcttcttggagaaatagttattataattacagatcagtatgga
aatcaaattccagcattttcaccaaattctttatctgctttgtcaattgctggagttgga
cttgatagttcaaatttgaaaactacttttcaggaaagcacacaaagtataagtgtaaga
ggcatcagattcattccaggtcctcctggaaataaggatctttgttttacttggcgtgag
ttttctgactttattcgagtacagctaatttctggaccgccagctaaacttctccttatc
gactggccagaactaaaggagtccattccagtgattaatggaagagaattacagaacccc
cttactgttcaactttgtgatcagtgggataatccagcacctgtaccacaggttaaaata
agtctcataaaaccgaacaacttaaagctcatgccttcaaaccaacagcataaaacagat
gagaagggcagggctaatttgggagtattcactgttcttgctcctcggggagaacatatt
atgcagattaaagctgtctataacaaatgtaccatagaaggacctacaattaagttaatg
attcttccagaccctgaaaaaccaattcgtctcaatgttaaatatgacagagatgcttcc
tttttagcagggggtgttttcactgattttatgattactgttatttctgaagatgacagt
attattaaaaatattaatccagcacgaatttccatgaaaatgtggaagttatcaaacagt
ggcaaccgaccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgac
aaggaagaaggctgcttctatttcagggataaagcaattcctaacaaagtggggacatac
tgtatccagtttggttttatgatggataaagcaaatactctcaacagtgaacaggttatt
attgaggttctacctaatcaacctgtgaagttagttcccgaaaatcaaccagctacacca
gctgtttctaatgttcgctcagttctcagtaggaccttggtcagagatttatgtctcaat
gtcacggatgagtatagcaaccatactggacttgatttggttggtactgtaatagctacc
attaaaggttctaatgaagaagataatgataccccactctttattggaaaagttagaaca
cttgaatttccttttgtgaatggttcagctgaaatcacaagtctagtgctggcagaaaat
agccccggaagagatagtactgagtatttcattgtatttgagcctcgcctgtcacgttta
tcaagaactttagaaccatatatcctaccatttatgttttacaacgatgttaagaaacag
caacaaatggctgcacttacaaaagaaaaggatcaattatctaagtctattattatgtat
cgaaatttatttgacgccagcaaacagcttcttgatgaaatgaaatgccaagttgaagaa
gcaaagttaaaggaggctcagttgcgaaatgaactaaaaattcataatattgatattcct
gcagcacagcagataccacacattgaagcacttttgaaaaaaaagatgtcagaacaggaa
gaactaaaaaaaaaacccagaagatcatgtactcttccaaactatacaaaaggcagtgga
gatgttttaggaaagattgcacatctagcacaaattgaagatgatagagctgcaatggtt
atttcttggcatctggcaagtgacatggactgtgtagttactctaaccactgatgctgca
cgtcggatctatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttat
aagaagaatattccagattggaaaagacctctacctcatttcagaaatgggaaattgtat
tttaaacccattggaaatcccgtctttgcccgagatttgttaacttttccagataatgta
gaacattgtgaaacagtatttggtatgctgttaggagacaccatcattttggacaatctg
gatgcagccaatcattatagaaaagaggttgttaaaaatacacattgtcctacactgctg
accagagatggagatcgaattcgaagtaatggaaagtttggaggcctgcagaataaagct
cctccaatggataaacttcggggaatggtatttggagctccagtaccaaaacaatgccta
atcataggggaacaaatagagcttcttcagcagtatcgttctgctgtgtgcaagctgggc
actgtgaatgaagaccttaatggtcaacttgagtaccttcacactcctgatatgaagaag
aaaaagcaagaacttgatgaacaagagaaaaatctgaaaataatagagcaaaaactaggt
atgactcccacacgtaaatgtaatgactcattacgccattcaacaaaggttgaggtagta
gattgtccaattcctcctaaaagaatgagaagagaagctacaagacaaaataggattata
accaaaacagatgtgtga
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