KEGG   Oryctolagus cuniculus (rabbit): 100349603
Entry
100349603         CDS       T03373                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    100349603
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocu03000]
    100349603
   04121 Ubiquitin system [BR:ocu04121]
    100349603
   03036 Chromosome and associated proteins [BR:ocu03036]
    100349603
Enzymes [BR:ocu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     100349603
Transcription factors [BR:ocu03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    100349603
Ubiquitin system [BR:ocu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     100349603
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100349603
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     100349603
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box Cupin_8 JmjC AppA_SCHIC
Other DBs
NCBI-GeneID: 100349603
NCBI-ProteinID: XP_017205017
Ensembl: ENSOCUG00000005961
LinkDB
Position
21:6520550..6678250
AA seq 1344 aa
MEKLRPQRESTLPKDTKPASGESGLEPRLPISAVPLSTTCGSPDSQERPIDRQRYDENED
LSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVPLVFREKDGLG
IKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVIS
LEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPKVKKYCLMSVK
GCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERC
QRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFR
YPFYYEMCWYVLERYVYCVTQRSHLTQEYQRESMLIDAPRKPSIDGFSSDSWLEMEEESC
EQQPQEEEKEEEEEEGEGSDKAPRPPTEGPASPTSNPSEDQEAPGKKPKAPAMRFLKRTL
SNESEESVKSTAMATDYPKTPTGSPSTEVSAKWTHLTEFELKGLKALVEKLESLPENKKC
VPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVPVVTWPKKTPKNRAVGRPKGKLGPAS
AVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIA
PVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDEL
PNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSEC
EEAPRRRSDEHPKKVPPDGILRRKSDDVHLRRKRKYEKPQELSARKRASTLQTSPGSSSH
LSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNTEDRMASKPLRRFKQE
PEDDLPEAPPKTRESDHSRSSSPTAGPSTEAAEGPEEKKKVKMRRKRRLPNKELSKELSK
ELNHEIQKTESSLAHENHQPIKSEPESEHEEPKRPLGLCERPHRFSKGLNGAPRELRHPL
GSGLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMA
VFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLS
WTNISKKQLSWLINRLPGLRDLVLSGCSWVAVSALCSSSCPLLRTLDVQWVEGLKDAQMR
DLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVT
DQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCE
QFIAEMSVSVQFGQVEEKLLQKLS
NT seq 4035 nt   +upstreamnt  +downstreamnt
atggagaaactgaggccccagagagaaagcacattgccaaaagacacaaagccagccagt
ggagaatcaggattggaacccaggctcccaatttccgcagtgcctctcagcaccacgtgt
ggctcccctgatagccaggagcgcccgattgaccgccagagatacgacgagaacgaggac
ttgtcggacgtggaggagatcgtcagcgtccgcggcttcagcctggaggagaagctgcgc
agccagctgtaccagggggacttcgtgcacgccatggagggcaaagatttcaactatgag
tacgtacagagagaagctctcagggttcccctggtatttcgagaaaaggatggactggga
attaagatgcctgaccccgatttcacagtccgggatgtgaaactcctggtggggagccgg
cggctggtggatgtgatggacgtgaacacccagaaaggcacggagatgagcatgtcccag
ttcgtgcgctactatgagacccccgaggcccagcgggacaagctgtacaacgtcatcagc
ctcgagttcagccacaccaagttggagcacttggtcaagcgtcccactgtggtggacctg
gtggactgggtggacaacatgtggccccagcacctgaaggagaagcagacggaagccacg
aacgccatcgcagagatgaagtacccgaaagtgaagaagtactgtctgatgagcgtcaaa
ggttgcttcactgacttccacatcgactttggaggcacttccgtctggtaccatgtcttc
cggggagggaagatcttctggctgatcccgccgaccctgcacaacttggccctgtacgag
gagtgggtgctgtcgggaaagcagagcgacatctttctgggggaccgcgtggagcgatgc
caaagaattgagctgaaacagggatacacgtttttcattccctctggttggatccatgcc
gtctacacccccgtagactccctggtgttcggcggaaacatcctgcacagcttcaacgtg
ccgatgcagctgcggatctacgagattgaggacaggacccgggtgcagcctaagttccgt
taccccttctactatgagatgtgctggtatgtcttggagagatacgtgtattgtgtgacc
cagcgctcccacctcactcaggagtaccagagggaatccatgctcattgatgccccacgg
aagcccagcatagacggcttctcatctgattcctggctggagatggaggaggagtcgtgc
gagcagcagccccaggaggaagagaaggaggaggaggaggaggagggcgagggttcggac
aaggcaccgaggccgcccaccgaaggccccgcctcacccaccagcaacccttctgaggac
caggaggcccctgggaagaagcccaaggcacccgccatgcggttcctcaaaaggactttg
tctaacgagtcggaggagagtgtcaagtccacagccatggccacggattaccccaagacg
cccaccggctcccccagcaccgaggtctctgccaagtggacccacctcaccgagttcgag
ctgaagggcctgaaagctctcgtggagaaactggagtccctcccagagaacaagaagtgc
gtccccgagggcatcgaggacccccaggcacttctggagggtgtgaagaatgtcctgaag
gagcacgcggatgacgaccccagtctggccatcactggagtccccgtggtcacttggcca
aagaagactccgaagaaccgggcagtgggtcggcccaagggcaagctgggcccggcctcc
gcggtgaagttggccgccaaccggacgactgcaggagctcgccggcgccggacgcgatgc
cgcaagtgcgaggcctgcctgcggaccgagtgtggagagtgtcacttctgcaaggacatg
aagaagttcgggggccccgggcggatgaagcagagctgcatcatgcggcagtgcatagcg
ccagtgctgccccataccgctgtgtgccttgtatgtggcgaggcggggaaggaggacacg
gtggaggaggaagaaggcaagttcaacctcatgctcatggagtgctccatttgcaacgag
atcatccaccctggatgccttaagattaaggagtcagagggtgtggtcaacgacgagctt
cccaactgctgggagtgtccgaagtgtaaccacgccggcaagaccgggaaagcctacaag
caaaagcgtggccctggctttaagtacgcatccaacctgcccggctccctgctcaaggag
cagaagatgaaccgggacaacaaggaagggcaggagcctgccaagcggaggagtgaatgt
gaggaggcgccccggcgcaggtcggacgagcaccccaagaaggtgcccccagacggtatc
ctgcgccggaagtcggacgacgtgcacctgaggaggaagcggaagtatgagaagccccag
gagctgagtgcgcgaaagcgagcctcgacgcttcagacgtcgcccggttcctcctctcac
ctctcgccgaggccccctctcggcagcagcctcagcccttggtggagatccagtctcact
tacttccagcagcagctaaaacctggcaaagaagataagcttttcaggaaaaagcggagg
tcctggaagaacacggaggaccggatggctagcaagcccctgcggcgcttcaagcaggaa
ccagaggacgatctgcccgaggcgccccctaagaccagggagagtgaccactcgcgctcc
agctcccccacggccgggcccagcacggaggcggccgagggcccagaggagaagaagaag
gtgaagatgcgccggaaacggcggctccccaacaaggagctgagcaaggagctgagcaag
gagctgaaccacgagatccagaagacggagagcagcctggcccacgagaaccaccagccc
atcaagtcggagccggagagcgagcacgaggagcccaagcggcccctgggtctctgcgag
cgcccccaccgcttcagcaaagggctcaatggcgccccccgggagctgcggcacccgctg
gggtctggcctgcgcagcccgccccgcgtcatctcccggcccccaccctcagtgtccccg
cccaagtgcatccagatggagcgccacgtgatccggccgccccccatcagccccccgccc
gactcactgcccctggatgatggggcggcccatgtcatgcacagggaggtgtggatggcc
gtcttcagctacctcagccaccaagacttatgtgtgtgcatgcgggtctgcaggacctgg
aaccgctggtgctgcgataagcggttgtggacccgcattgacctgaaccactgcaagtcc
atcacgcccctgatgctgagtggcatcatccggcgacagcccgtctccctcgacctcagc
tggaccaatatctccaagaagcagctaagctggctcatcaaccggttgcctgggctccga
gacttggtgctgtcaggctgctcgtgggtcgcggtctcagccctctgtagttccagttgt
ccactgctccggaccctggatgtccagtgggtagaaggactaaaggatgcccagatgcgg
gatctcctgtccccacccacagataacaggccaggtcagatggacaatcggagcaagctc
cggaacatcgtggagctgcgcctggcaggcctggacattacagacgcatccttgcggctt
atcatccgccacatgcccctgctctccaagctgcacctcagttactgtaatcacgtcact
gaccagtctatcaacctgctcactgctgtcggcaccaccacccgagactccttaaccgag
atcaacttgtcagactgcaataaggtcactgaccagtgcctctccttcttcaaacgctgc
gggaatatctgccacatcgacctgaggtactgcaagcaagtcaccaaggagggctgcgag
cagttcatagccgagatgtcggtcagtgtccagtttgggcaagtggaagagaaactccta
cagaaactgagctag

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