KEGG   Ochotona curzoniae (black-lipped pika): 121156428
Entry
121156428         CDS       T11174                                 
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
ocz  Ochotona curzoniae (black-lipped pika)
Pathway
ocz04010  MAPK signaling pathway
ocz04064  NF-kappa B signaling pathway
ocz04120  Ubiquitin mediated proteolysis
ocz04140  Autophagy - animal
ocz04144  Endocytosis
ocz04380  Osteoclast differentiation
ocz04517  IgSF CAM signaling
ocz04620  Toll-like receptor signaling pathway
ocz04621  NOD-like receptor signaling pathway
ocz04622  RIG-I-like receptor signaling pathway
ocz04657  IL-17 signaling pathway
ocz04722  Neurotrophin signaling pathway
ocz04936  Alcoholic liver disease
ocz05132  Salmonella infection
ocz05133  Pertussis
ocz05135  Yersinia infection
ocz05140  Leishmaniasis
ocz05142  Chagas disease
ocz05145  Toxoplasmosis
ocz05152  Tuberculosis
ocz05160  Hepatitis C
ocz05161  Hepatitis B
ocz05162  Measles
ocz05168  Herpes simplex virus 1 infection
ocz05169  Epstein-Barr virus infection
ocz05170  Human immunodeficiency virus 1 infection
ocz05171  Coronavirus disease - COVID-19
ocz05200  Pathways in cancer
ocz05222  Small cell lung cancer
ocz05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
ocz05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ocz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    121156428 (TRAF6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    121156428 (TRAF6)
   04064 NF-kappa B signaling pathway
    121156428 (TRAF6)
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    121156428 (TRAF6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    121156428 (TRAF6)
   04140 Autophagy - animal
    121156428 (TRAF6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    121156428 (TRAF6)
   04621 NOD-like receptor signaling pathway
    121156428 (TRAF6)
   04622 RIG-I-like receptor signaling pathway
    121156428 (TRAF6)
   04657 IL-17 signaling pathway
    121156428 (TRAF6)
  09156 Nervous system
   04722 Neurotrophin signaling pathway
    121156428 (TRAF6)
  09158 Development and regeneration
   04380 Osteoclast differentiation
    121156428 (TRAF6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    121156428 (TRAF6)
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    121156428 (TRAF6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    121156428 (TRAF6)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    121156428 (TRAF6)
   05161 Hepatitis B
    121156428 (TRAF6)
   05160 Hepatitis C
    121156428 (TRAF6)
   05171 Coronavirus disease - COVID-19
    121156428 (TRAF6)
   05162 Measles
    121156428 (TRAF6)
   05168 Herpes simplex virus 1 infection
    121156428 (TRAF6)
   05169 Epstein-Barr virus infection
    121156428 (TRAF6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    121156428 (TRAF6)
   05135 Yersinia infection
    121156428 (TRAF6)
   05133 Pertussis
    121156428 (TRAF6)
   05152 Tuberculosis
    121156428 (TRAF6)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    121156428 (TRAF6)
   05140 Leishmaniasis
    121156428 (TRAF6)
   05142 Chagas disease
    121156428 (TRAF6)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    121156428 (TRAF6)
  09167 Endocrine and metabolic disease
   04936 Alcoholic liver disease
    121156428 (TRAF6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocz04131]
    121156428 (TRAF6)
   04121 Ubiquitin system [BR:ocz04121]
    121156428 (TRAF6)
Enzymes [BR:ocz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121156428 (TRAF6)
Membrane trafficking [BR:ocz04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    121156428 (TRAF6)
Ubiquitin system [BR:ocz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    121156428 (TRAF6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 Sina_ZnF SlyX TRAF3_RING RING_XB3-XBAT31 EzrA U-box zf-RING_11 Spc29 CCDC18_1st DUF7310 Med21 DUF4455 PspA_IM30 DUF3450 DUF6271 DUF16 CEP104_ZnF Myosin_tail_1
Other DBs
NCBI-GeneID: 121156428
NCBI-ProteinID: XP_040836055
LinkDB
Position
Unknown
AA seq 540 aa
MSLLNCENSCGSGQSDSDCCAAMASSCSATTKEDSMSGTASTGNLSGSYMKGIQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD
NFAKREILSLTVRCPNAGCLHKMELRHLEDHEAHCGFALVNCPQCQHPFQKCQLNTHILK
DCPRRQVSCINCAVSMAFEDKEIHDQTCPLANVVCEYCNTVLIREQMPNHYDLDCPTAPI
PCTFSTFGCHEKMQRNHLARHLQEKTQLHMRMLAQAVHSLNLALTPMPPRDVPQYDIPSQ
PRVPSGYPESHNFQETIQQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVA
EIEAQQCNGIYIWKIGNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQR
CANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPTRQNHEEIMDAKPELLAFQRP
TIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRREGFQPRSTDAGV
NT seq 1623 nt   +upstreamnt  +downstreamnt
atgagtctgctaaactgtgaaaacagctgtggatctggccagtccgacagtgactgctgt
gctgccatggccagctcatgtagtgcgacgacgaaggaggacagtatgagtgggactgcc
agcacagggaacctctctggctcatatatgaaaggtatccagggttatgatgtggagttt
gacccgcccctggaaagcaagtacgaatgcccgatctgcttaatggcattacgggaagct
gtgcagacaccatgcggtcataggttctgcaaggcctgcatcatcaaatcaataagggat
gcaggtcacaaatgtccagttgacaatgaaatattgttggaaaatcagctgtttcctgac
aattttgcaaagcgagagattctttctctgacggtgaggtgtccaaatgcaggctgttta
cacaagatggaactcaggcatctggaggatcatgaagcacattgtggatttgctcttgtg
aattgtccccagtgccagcatcccttccagaagtgccagcttaacactcatatcctcaag
gattgtcccaggagacaagtctcttgtataaattgtgctgtatccatggcattcgaggat
aaagagatccatgaccagacctgtcctttggcaaatgtcgtctgtgaatactgcaacacg
gtgctcatcagagaacagatgcctaatcattatgatctagactgccctactgcgccaatt
ccatgcacgttcagtacttttggatgccatgaaaagatgcagaggaatcacctggcacgc
cacctacaagagaaaacccagttgcacatgaggatgttggctcaggctgtgcacagttta
aaccttgctttaactcccatgccaccacgtgatgtgcctcagtatgacattccctcccag
ccccgggttccctctggctacccagagagccacaatttccaggaaaccattcagcagtta
gaagggcggctggtaagacaagaccatcaaattagagagctaactgctaaaatggaaact
cagagcatgtatgtgagtgagctcaaacgaaccattcgaaccctcgaggacaaagttgct
gaaattgaagcccagcagtgcaatgggatttacatctggaagattggcaactttgggatg
cacctcaaatcccaagaagaggagaaacctgttgttattcatagccctggattctacaca
ggcaaacctggatacaaactctgcatgcgcctgcaccttcagttaccaactgctcagcgc
tgtgccaactacatatccctctttgtccacacgatgcaaggagagtatgacagccacctt
ccctggcccttccagggcacaatacgccttacaattcttgatcagtctgaagcaccaaca
aggcaaaaccatgaggagataatggatgccaagccagagttacttgccttccagcggccc
acaatcccacggaacccaaaaggttttggctacgtaactttcatgcaccttgaagcctta
agacaaaggacctttataaaggatgacacattattagtgcgctgtgaagtctccacccgc
ttcgacatgggtagccttcggagggagggttttcagccacgaagtactgatgcaggggta
tag

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