Ochotona curzoniae (black-lipped pika): 121162338
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Entry
121162338 CDS
T11174
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121162338 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocz03041
]
121162338 (EFTUD2)
Spliceosome [BR:
ocz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121162338 (EFTUD2)
Complex C
U5 SnRNP specific factors
121162338 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
121162338
NCBI-ProteinID:
XP_040845240
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDEDDDDIGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAMVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgaatttggaaattatattggaccagagcttgattctgat
gaagatgatgatgaattgggcagagagaccaaagatcttgatgagatggatgatgatgag
gacgatgatgacataggagaccatgatgaagatcaccctgggatggaggtggtgctacat
gaggataagaagtactaccccacagcggaggaggtgtatgggccagaggtggagaccata
gttcaggaggaagatacccagccactcacagaacccattattaagccagtgaagaccaag
aagttcactctgatggagcagacgttacctgtcacggtgtatgaaatggatttcttagca
gatctgatggacaattcggaactcatcagaaatgtaaccctttgtggccatctccatcat
ggcaagacatgctttgttgattgtttgatcgagcagacacatccggaaatcagaaagcgc
tacgaccaagatctgtgctatactgacatcctcttcactgagcaggagagaggcgttggc
atcaagagcactcccgtgacggtggtcttgccagacaccaaaggaaagtcttacctcttc
aatatcatggacaccccaggacatgtgaatttctcggatgaagtcacagctggcttgcgc
atttcggatggggtggtgcttttcattgatgctgctgagggggtgatgctgaacacggag
cggctgatcaagcacgcagtgcaggagaggctggccgtcaccgtgtgtatcaacaagatt
gatcggctgatcctggagctgaagctgcctccgaccgatgcctattacaagctgcgccac
attgtggatgaggtcaatggattaataagcatgtattccaccgatgagaacctgatcctg
tccccactgctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacgctg
ggctcctttgccaagatctacgctgacaccttcggtgatattaattaccaggaattcgct
aaaagactctggggtgatatctacttcaaccctaagacgcgaaaattcactaaaaaagcc
ccaaccagcagttcccaaagaagctttgtggagttcatcctggaaccgctttataagatc
cttgctcaggtggtgggcgatgtggacaccagcctcccgaggacgctggatgaactgggc
atccacctgaccaaggaagagctgaagctgaatatccgccctctgctcaggctggtctgt
aagaagttcttcggcgagttcacaggctttgtggatatgtgtgtgcagcatatcccttct
ccaaaggtgggcgccaagcctaagattgaacatacttacactggtggtgtggattctgat
ctcggcgaggccatgagcgactgtgaccctgatggcccactgatgtgccacaccactaag
atgtacagcacggatgatggagtgcagtttcatgcctttggccgggtgctgagtggcacc
atccatgctgggcagcccgtgaaggtgctgggggagaactacaccctagaagacgaggaa
gactctcagatatgcactgtgggccgcctctggatctccgtggccaggtaccacattgag
gtgaaccgtgttcctgcaggcaactgggtactgattgaaggtgttgatcaaccaattgtg
aaaacagcaaccattactgaaccccgaggcaatgaggaggctcagattttccggccattg
aagttcaacacaacctctgtgattaagattgccgtggagccagtgaacccgtcagaactc
cccaagatgctcgacggcctgcgcaaagtcaacaagagttatccttccctcaccaccaag
gtggaggagtctggtgagcatgtgatcctgggcaccggggagctctacctggactgtgtc
atgcatgacttgcggaagatgtactcagagattgacatcaaggtggccgacccagttgtc
acattttgtgagacagtggtagaaacatcttccctcaagtgctttgctgaaacgcccaat
aaaaagaataagatcaccatgattgccgagcctctggagaagggccttgccgaggacatc
gagaatgaggtggtccagatcacgtggaacaggaagaaactgggcgagttctttcagacc
aagtatgactgggatctgctggctgcccgttccatctgggcttttggccctgatgccacc
ggccccaatatcctggtggatgatactctcccatcggaggtggacaaggctcttcttggc
tcggtgaaggacagtatcgttcaagggttccagtggggaaccagggaggggcccctctgt
gatgagttgattcgaaatgtcaagttcaagatcctggatgcaatggtggcccaggagccc
ctgcaccggggtgggggccagatcatccccacagccaggagagttgtctactctgctttc
ctcatggccaccccacgtctgatggagccctactactttgtggaggtccaggcccctgca
gattgtgtctctgccgtttacactgtcctggccaggcgcaggggacacgtgactcaggac
gcacccattccaggatccccactgtacaccatcaaagctttcatcccagccattgattcc
tttggttttgagactgatctccgcactcatacccagggacaagctttttctctgtccgtc
ttccaccactggcagattgtacccggtgatcccctggacaagagtattgtcattcgcccc
ttggagccccagccagctcctcacctggcccgagagttcatgatcaaaacccgtcggagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgacgatcctatgttgctggag
cttgccaagcaggatgttgtgctcaattaccccatgtga
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