Ochotona curzoniae (black-lipped pika): 121162480
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Entry
121162480 CDS
T11174
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ocz Ochotona curzoniae (black-lipped pika)
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocz04040
]
121162480 (SCN4A)
Ion channels [BR:
ocz04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121162480 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
121162480
NCBI-ProteinID:
XP_040845434
LinkDB
All DBs
Position
Unknown
AA seq
1821 aa
AA seq
DB search
MANSSLPTLVPLGPQCLRPFTRESLVAIERRAVEEEARLQRNKQMEIEEPERKPRSDLEA
GKNLPLIYGDPPPEVIGIPLEDLDPYYSDKKTFIVLNKGKAIFRFSATPALYILSPFSIV
RRGAIKVLIHSLFSMFIMITILTNCVFMTMSNPPPWSKNVEYTFTGIYTFESLIKMLARG
FCIDDFTFLRDPWNWLDFSVIMMAYLTEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPFNDTNTTWYGNDTW
DGNATWDGQESWASNSTFDWEAYINDEGNFYFLEGANDALLCGNSSDAGHCPEGYECIKA
GRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYL
INLILAVVAMAYAEQNEATLAEDQEKEEEYQQMLEKFKKQQEELEKAKAAQALEGGEADG
DPAHSKDCNGSLDTAQGEKGAPRQSCSAESAISDAMEELEEAHQKCPPWWYKCAHKVLIW
NCCAPWVKFKNIIHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHFDNVLSVGNLVFT
GIFTAEMVLKLIAMDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLLRVFK
LAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIASDCS
LPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQAMCLTVFLMVMVIGNLVVLNLFL
ALLLSSFSADSLAASDEDGEMNNLQIAIGRIKWGIGFAKAFLLGLLHGKVLSPKDIMLSL
GKPGGAGEAEESAPEDEKKEPPPEEDDRDLKKDNHILNHVGLADGPRSSIELDHLNFINN
PYLTIQVPIASEESDLEMPTEEETDTFSEPEDMKKPLPPPPDGNSSVCSTADYKPPEEDP
EEQAEENPDGEQPEECFTEACVQRCPFLYVDVSQGRGKQWWTLRRACFKIVEHNWFETFI
VFMILLSSGALAFEDIYIEQRRVIRTILEYADKVFTYIFIVEMLLKWVAYGFKVYFTNAW
CWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAI
PSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCINTTTSERFDISEVNNKSECESLMHTGQ
VRWLNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQPQYEVNLYMYLYFVI
FIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPR
PQNKIQGMVYDFVTKQMFDITIMILICLNMVTMMVETDDQSELKVDILYNINMIFIIIFT
GECVLKMIALRQYYFTVGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGR
VLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKEAGIDDMF
NFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPTLENPGTSVRGDCGNPSIGICF
FCSYIIISFLIVVNMYIAIILENFNVATEESSEPLGEDDFEMFYETWEKFDPDATQFIDY
SRLSDFVDTLQEPLRIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDAL
KETMEEKFMAANPSKVSYEPITTTLKRKHEEVCAIKIQRAYRRHLLQRSVKQASYMYRHS
QDGTGGGAPEKEGLIAEAMSKMYGPENGASLVQGQGAEEKGSPEDVSPAREHTSVSSSGS
ALPSTPAPGQTVRPGVKESLV
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
atggccaactcgtctctgcccaccctcgtgcctctgggcccccagtgcctgcggcccttc
acccgggagtccttggtggccatagagcggcgggcagtggaggaggaggccaggctgcag
cggaacaagcagatggagatcgaggagcccgaacggaagccacgcagtgacctggaggcc
ggcaagaacctgcccctcatctacggggatcccccacccgaggtcatcggcatccccttg
gaagacctggacccctactacagcgacaagaagaccttcatcgtcctcaacaagggcaag
gccatcttccgcttctctgccactcctgccctctatatactgagccccttcagcatcgtc
aggcgtggcgccatcaaggtgctcattcactcgctgttcagcatgttcatcatgatcacc
atcctgaccaactgcgtgttcatgaccatgagtaacccgcccccctggtccaagaacgta
gaatataccttcacagggatctacacctttgagtccctcatcaagatgctggcccgaggt
ttctgcattgatgacttcacattcctccgggacccctggaactggctggacttcagcgtc
atcatgatggcgtacctaacagagtttgtggacttgggcaacatctcagcactgaggacc
ttccgggtgttgcgagccctgaaaaccatcacggtcatcccagggctgaagacgatcgtg
ggggccctgatccagtcggtgaagaagctgtcggatgtgatgatcctcacggtgttctgc
ctgagcgtgttcgcgctcgtggggctgcagttgttcatggggaacctgcggcagaagtgt
gtgcgttggcccccgcccttcaatgacaccaacaccacgtggtacggcaatgacacctgg
gatggcaatgccacgtgggacggccaagagagctgggctagcaactccacctttgactgg
gaagcctacatcaatgacgaaggaaacttctacttcttggagggtgccaacgatgccctg
ctctgtgggaacagcagtgatgcagggcactgccccgagggctatgagtgcatcaaggct
ggacggaaccccaactatggctacaccagctatgacaccttcagctgggccttcctcgct
ctcttccgcctcatgacccaggactactgggagaatctcttccagctgacccttcgagca
gctggcaagacctacatgatcttcttcgtcgtcatcatcttcttgggctctttctacctc
atcaacctgatcctggccgtggtggccatggcctacgcagagcagaatgaggccacactg
gctgaggaccaggagaaggaggaggagtatcagcagatgctggagaaattcaagaagcag
caggaggagctggaaaaggccaaagctgcccaggccctggaaggtggggaggcagacgga
gacccagcccacagcaaagactgcaatggcagcctggacacagcacagggggagaagggc
gccccaagacagagctgtagtgctgagagcgccatctcggacgctatggaggagctggaa
gaggcccaccagaaatgcccaccttggtggtacaagtgcgcccacaaagtgctcatatgg
aactgctgcgccccttgggtgaagttcaagaacatcattcacctgatcgtcatggacccc
tttgtggacctgggcatcaccatctgcatcgtgctcaacaccctcttcatggccatggag
cactaccccatgactgagcattttgacaatgtcctctctgtgggcaacctggtcttcacc
ggcatcttcactgcagagatggttctgaagctgatcgccatggacccctacgaatatttc
cagcaaggctggaacatcttcgacagcttcattgtcaccctcagcctggtggagctgggg
ctggccaatgtgcaggggctgtccgtgctccgttccttccgtctgctgcgggtcttcaag
ctggccaagtcatggccgacgctcaacatgctcatcaagatcattggcaactcagtgggg
gcgctgggcaacctgacgctggtgctggccatcatcgtgttcatcttcgccgtggtgggc
atgcagctgttcggcaagagctacaaggagtgcgtgtgcaagatcgcctcggactgcagc
ctgccccgctggcatatgcacgacttcttccactccttccttatcgtcttccgcatcctc
tgcggggagtggattgagaccatgtgggactgcatggaggtggccggccaggccatgtgc
ctcaccgtcttcctcatggtcatggtcatcggcaaccttgtggtcctgaacctgttcctg
gccctgcttctgagctccttcagtgccgacagcctggcagcctcggatgaggacggcgag
atgaacaacctgcagatcgccataggccgcatcaagtggggcatcggctttgccaaggcc
ttcctcctggggctgctgcatggcaaggtgttgagccccaaggatatcatgctcagcctg
gggaagcctgggggtgctggagaggctgaggagagcgcccccgaggatgagaagaaggaa
ccgccccccgaggaggacgacagagacctgaagaaggacaaccacatcctgaaccacgtg
ggcctggctgacggcccccgctccagcatcgagctggaccatctcaacttcatcaacaac
ccctacttgaccatacaggtgcccatcgcctccgaggagtccgacctggagatgcccaca
gaggaggagactgacaccttttcagagcctgaggacatgaagaagccactgccgccgccc
ccagacgggaactcctccgtctgcagcacagctgactacaaaccccctgaggaggacccc
gaggagcaggctgaggagaaccctgatggcgagcagccagaggagtgcttcacagaggcc
tgcgtgcagcgctgccctttcctctacgtggacgtgtcccagggccgcgggaagcagtgg
tggacgctgcgcagggcctgcttcaagattgtcgaacacaactggttcgagaccttcatt
gtcttcatgatcctgctcagcagtggggccctggccttcgaggacatctacatcgagcag
cggcgggtcatccgcaccatcctggagtatgctgacaaggtcttcacctacatcttcatc
gtggagatgctgctcaagtgggtggcctacggcttcaaggtgtacttcaccaacgcctgg
tgctggctcgacttcctcatcgtagacgtctccatcatcagcttggtggccaactggttg
ggctactcagagctgggacccatcaaatctctgcggacactgcgggccctgcgtcccctg
cgggcactctcccgattcgagggcatgagggtggtagtgaatgccctcctgggtgccatc
ccctccatcatgaatgtgctgcttgtgtgcctcatcttctggctcatcttcagcatcatg
ggcgtcaacctgtttgcgggcaaattctattactgcatcaacaccaccacctctgaaagg
ttcgacatctccgaggtcaacaacaagtccgagtgtgagagcctcatgcacacaggccag
gtccgctggctcaacgtcaaggtcaactacgacaacgtgggcctgggctacctctccctg
ctgcaggtggccacctttaagggctggatggacatcatgtatgcagctgtggactcccgg
gagaaggaggaacagccgcagtatgaggtgaacttgtacatgtacctctacttcgtcatc
ttcatcatctttgggtccttcttcaccctcaacctcttcattggtgtcatcattgacaac
ttcaaccagcagaagaaaaagtttggagggaaagacatcttcatgacggaggaacagaag
aaatactacaatgctatgaagaagctcggctccaagaagcctcagaagccgatcccccga
ccccagaacaagatccagggcatggtgtatgacttcgtaacgaagcagatgtttgacatc
accatcatgatcctcatctgcctcaacatggtcaccatgatggtggagacggacgaccag
agcgagctcaaggtggacatcctctacaacatcaacatgatcttcatcatcatcttcacg
ggagagtgcgtgctcaagatgatcgccctgcgccagtactacttcactgtcggctggaac
atctttgacttcgtggtggtcatcctgtccattgtgggccttgcactctctgacctgatc
cagaagtacttcgtgtccccaaccctgttccgcgtgatccgcctggcacgcatcgggcgg
gtcctgcgcctgatccgtggggccaagggcatccggacgctgctcttcgccctcatgatg
tcactaccggctctcttcaacatcggcctcctcctcttcctcgtcatgttcatctactct
atctttggcatgtccaactttgcctatgtcaagaaggaggcgggcatcgacgacatgttc
aactttgagaccttcggcaacagcatcatctgcctcttcgagatcaccacgtcggccggc
tgggatgggctgctcaaccccatcctcaacagcgggcccccagactgcgaccccacactc
gagaatccgggcaccagcgtcaggggcgactgtggcaacccctccatcggcatctgcttc
ttctgcagctacatcatcatctccttcctcatcgtggtcaacatgtacatcgccatcatc
ctggagaacttcaacgtggccaccgaggagagcagcgagcctctgggtgaggatgacttc
gagatgttctacgagacgtgggagaagttcgaccctgacgccacccagttcatcgactac
agtcgcctctctgacttcgtggacacgctgcaggagccactaaggatcgccaagcccaac
aagatcaagctcatcacgctggacctgcccatggtgccaggggataagatccactgcctc
gacatcctcttcgccctgaccaaggaggtgctgggtgactctggggaaatggatgccctc
aaggagaccatggaggagaagttcatggcagccaacccgtccaaggtctcctacgagccc
atcaccaccaccctcaagaggaaacacgaggaggtgtgtgctatcaagatccagagggcc
tatcgccgccacctgctacagcgctctgtcaagcaggcctcctacatgtaccgtcacagc
caggacggcacaggaggcggggccccagagaaggagggactgatcgccgaggccatgagc
aagatgtatggccctgagaacggggccagccttgtgcagggccagggagcagaggagaag
ggctcccctgaggatgttagccctgccagggagcacacatctgtcagctcctcagggtct
gccctcccttcaacccctgcaccagggcagactgtccgcccaggggtcaaagagtctctg
gtctag
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integrated database retrieval system
