Ochotona curzoniae (black-lipped pika): 121163582
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Entry
121163582 CDS
T11174
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121163582 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocz03400
]
121163582 (LIG4)
Enzymes [BR:
ocz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121163582 (LIG4)
DNA repair and recombination proteins [BR:
ocz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121163582 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
HTH_Tnp_Tc3_2_like
Motif
Other DBs
NCBI-GeneID:
121163582
NCBI-ProteinID:
XP_040847080
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQRSKGRAEKIRHFSEFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRAPTAAHG
DAGDFAMTAYFVLKPRCSQKGSLSVQQVNELLDSVASSNSVRRKDLIKKSLLQLIVQSSA
LEQKWLIRMIVKDLKLGVSQQTILNTFHSDAVELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAVADVERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYTE
QFGSSPREGSLSPFIHSAFRADSQTCILDGEMMAYSPHTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRNRYEILSSLFTPIPGRIEIVHKALAHTKNEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGLRGGMM
SHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYELGLKLNKCWKPFHRKAPPGSILC
GTEKPEVYIEPCNSVIVQVKAAEIVPSSMYKTGCTLRFPRIEKMRDDKEWHECMTLDDLE
QLRGKALGKLATRHLCVGADDEPQEKKRKSAPKIKKVIGIIEHLKAPNLSNVNKVSSVFE
DVEFCVMSGTDSHPKPDLENRIAELGGCITQNPGPDTYCVIAGTENIRVKNIIASNKHDV
VKPAWLLECFRTKSCVPWQPRFMIHMCPSTKEHFAREYDRYGDSYFVDTDLNQLKEVFSG
MKNSQEQTPEEMASVIAELECRYSWDQSPLSMFRHHTVYLDMYTVINDLSTKIEATRLAT
KALELRFHGARVVSCLAEGVSHVIIGEDQSRVPDFKAFRRTLKRKFKILQEGWVTDSVQK
SELQEENQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacttcacaaactgttgcgtcccacgttcctttcgcagatttatgt
tcaactttggaaagaatacagagaagtaaaggacgtgcagagaaaatcagacattttagt
gagtttttagattcttggaggaaatttcatgatgcccttcataagaaccaaaaagacgtc
acagactcattttatcctgccatgagactcatccttcctcagctcgaaagagagagaatg
gcctatggcataaaagaaactatgcttgccaagctttatatagaattactcaacttacct
agagaggggaaagacgcgctgaagctgttgaactacagagcgcccactgcagcacacggg
gatgcgggggacttcgccatgaccgcgtactttgtgttgaagcctagatgctcccagaag
ggaagcctgagtgtacagcaggtcaacgagcttctggactcggttgccagcagtaactct
gtgagaaggaaagacctcatcaagaagagtcttctccagctcatagtgcagagctcagcg
ctggagcagaagtggctcatccgcatgatcgtcaaggacttaaagctcggtgtcagtcag
cagacgatactgaacactttccacagcgatgctgtggagttacataacgtcaccactgac
ctggagaaggtctgtaggcaactccatgatccttcggtaggactcagtgatatctccatc
actctgttctctgcctttaaaccaatgttagctgctgtcgccgatgttgagcgcattgag
aaggacatgaagcaccagagcttctacattgaaaccaagctggatggcgagcgcatgcaa
atgcacaaggatggggacgtctaccggtacttctcccgaaacggctataactacacggag
cagtttggctcctctccacgggaaggttccctcagccccttcatccacagtgccttcaga
gcagattcacagacctgtatcctcgatggtgagatgatggcctatagtccgcatacgcag
actttcatgcaaaaggggaataagtttgacattaaacggatggtagaagattctgatctg
cagacatgttactgtgtgtttgatgtcttgatggttaataataaaaagcttggacgggag
accttgagaaacaggtatgagattcttagtagtctttttacaccgataccaggtagaata
gaaattgtgcacaaagcactagctcataccaagaatgaagtgattgatgcattgaacgaa
gccatagataagagagaagagggaatcatgataaagcatccgctgtccatttacaagccg
gacaaaaggggtgaaggatggctgaaaattaagcccgagtatgtcagcggcctgatggac
gagttggacatcctaatagttgggggctactgggggaaaggcttacgtggtggaatgatg
tctcattttctgtgtgcagtcgcagagaagccccctcctggggaaaagccgtctgtgttt
catacgctctgtcgtgttggctcaggatacaccatgaaagaactctatgagctgggtttg
aaattgaacaaatgctggaagccattccataggaaagctcctccaggtagtattttatgt
ggaacagagaagccagaagtgtacattgagccttgtaattctgtgattgtccaagttaaa
gcagctgagattgtccccagcagtatgtataaaactggatgcaccctacgttttccacga
attgaaaagatgagagatgacaaagaatggcatgagtgcatgactctggatgacttagag
caacttcgcgggaaagcactggggaagctcgccaccaggcacctttgtgtaggcgctgat
gacgaaccccaagaaaaaaagcggaaatcggcccccaaaataaagaaagttattggaatt
attgaacatttaaaagcaccgaatctttctaatgtaaacaaagtctctagcgtatttgag
gatgtcgagttttgtgtcatgagtggaacagacagccacccgaaacctgacctggagaac
agaattgcagaattgggtggttgtataacacagaacccaggcccagacacgtactgtgta
attgcagggactgagaacatcagggtgaaaaacattattgcttcaaataagcatgatgtt
gtcaagcctgcgtggctcctggagtgtttcaggaccaaaagctgtgtgccttggcagcca
cgcttcatgatccacatgtgtccatcaactaaagaacattttgcccgtgagtatgatcgc
tatggagacagttattttgttgacacagatttgaaccagctgaaggaagtattctcagga
atgaagaattctcaagagcagactcctgaagaaatggcttctgtgattgcagagctagaa
tgtcgctattcctgggaccagtctcctctcagtatgtttcgacaccatactgtttatttg
gacatgtatactgttattaatgacctgagcaccaaaattgaggcaacgagattagctacg
aaggccttggagcttcgattccatggagccagagtggtttcttgtttagctgagggagtg
tctcatgtcatcattggggaggaccaaagccgagttccagattttaaagcttttagaaga
actcttaagaggaagtttaagatactgcaagaaggttgggtgaccgattcagtgcagaag
tctgaattgcaagaagaaaatcagtatttgctttaa
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integrated database retrieval system
