Orrella daihaiensis: DHf2319_10270
Help
Entry
DHf2319_10270 CDS
T08894
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
odh
Orrella daihaiensis
Pathway
odh03030
DNA replication
odh03410
Base excision repair
odh03420
Nucleotide excision repair
odh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
odh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DHf2319_10270 (ligA)
03410 Base excision repair
DHf2319_10270 (ligA)
03420 Nucleotide excision repair
DHf2319_10270 (ligA)
03430 Mismatch repair
DHf2319_10270 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
odh03032
]
DHf2319_10270 (ligA)
03400 DNA repair and recombination proteins [BR:
odh03400
]
DHf2319_10270 (ligA)
Enzymes [BR:
odh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DHf2319_10270 (ligA)
DNA replication proteins [BR:
odh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DHf2319_10270 (ligA)
DNA repair and recombination proteins [BR:
odh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DHf2319_10270 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DHf2319_10270 (ligA)
MMR (mismatch excision repair)
DNA ligase
DHf2319_10270 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DHf2319_10270 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
UOD49826
UniProt:
A0ABY4AJJ2
LinkDB
All DBs
Position
complement(2165895..2167934)
Genome browser
AA seq
679 aa
AA seq
DB search
MTEIPEDVKARAKQLGEQLEKHNYAYYVLDAPTVSDAEFDRLMRELQAIEAQYPELQTPD
SPTQRVGGRALDAFNSVRHAVPMLSLGNAFDDEEVTAFDQRVSQTLRQAGQMPDSGSVEY
FCELKLDGLALSLRYENGLLTQAATRGDGQTGEDVTANVRTIRSIPLKLKALAPSVIEVR
GEVFMDHEDFKRLNERQAARGDKVFVNPRNAAAGSLRQLDPKVTATRPLRFFAYGWGEVS
EPLRSTHSEMLDWIAELGLPVNRVEHACVQGSQGLLDFYRRVGAKRAALDYDIDGVVYKV
NSLVAQKTLGFVAKAPRFALAHKFAAEEAQTKLVGIDLQVGRTGAITPVARLAPVFVGGV
TVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPVLDKRPDNAVLFQMVSQCPVC
GSAIERPEGEAVARCTGGLFCGAQRKQSLIHAASRKALDIEGLGDKLVEQLVDRGRVHSL
ADIFALSEQELAGYERMGQKSAQNLVQAIDVARKPPLERFIYALGIRHVGETTARDLARH
FMSIEALMAANEESLLSVPDVGPVVAASVAHFFAETHNREVIADLLKAGVQPQAPEVVTG
ANADVAGQTFVLTGTLPTWTREEASAAIMAAGGKVSGSVSKKTSYVVAGEEAGSKLSKAE
SLGVPVIDEDGLKALLGIG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagattcctgaagacgttaaagcacgtgctaaacaattgggcgagcaactggaa
aagcacaattacgcttactacgtgctagatgcgcctacggtgtcagatgctgaatttgat
cgcttgatgcgcgagctgcaagcgatcgaggcccaatatcctgagctacaaacgccagac
tcacccactcaacgtgtgggtggccgggcgctagatgcgtttaattcagtgcgtcatgca
gtgccaatgctctcgcttggcaacgcttttgatgatgaggaagtcacagcatttgatcag
agggtttcgcaaactctgcgtcaggcagggcagatgcctgacagcggttcggttgagtat
ttttgcgaattaaagcttgatggactggcattaagcctaaggtatgagaatggtctactg
acccaagctgcaacccgtggcgatggccagactggcgaagatgtgactgccaatgtacgc
acgattcgttccattccattgaaactaaaggcgttagcgccaagcgtcatcgaagtgcgt
ggtgaagtgttcatggatcatgaggacttcaagcgcttgaatgagcgtcaggcagcacgt
ggtgataaagtctttgttaaccctcgcaatgcagcggctggtagcttgcgtcagctcgat
cccaaagtcactgcgacacgtcctttgaggttttttgcgtatggctggggtgaagtcagt
gagcccttgcgttcgactcacagcgagatgctggattggatcgcagagttgggattgcca
gttaatcgggttgagcatgcttgcgtgcagggcagccagggcttactggatttttacagg
cgggtcggggccaagcgcgcggcgctcgactatgacattgatggtgtggtctacaaggtt
aatagtctggttgcccagaagaccttggggtttgtggcaaaggcccctcggtttgcatta
gcgcataagttcgccgctgaagaagcacaaaccaagctagtgggaattgacttgcaggtt
ggccgcaccggcgcgattacaccggtggccaggcttgccccggtgtttgtcggtggggta
acagtgaccaacgccacgcttcacaacgaagatgaaatccgccgtaaggatgtccgaatt
ggtgatacggtgattgtgcgtcgcgctggtgatgtgattcctgaggtggtggggccagtt
ttagacaaacgcccggataatgccgtcttatttcaaatggtatcgcaatgtccggtgtgt
ggcagcgcgatcgaacgcccagaaggcgaagcggtggcgcgctgcacgggtgggctcttt
tgtggggcgcagagaaagcaaagcctgatccacgcggcttcacgcaaggcactggatatt
gaggggttgggtgacaaactcgttgagcagctcgttgacagggggcgtgttcacagcctg
gcagatatctttgcgttgtctgaacaggagcttgcgggttacgagcgcatgggccaaaag
tcagcacaaaacctggtgcaagctattgatgtagccagaaagccgccgttagagcgattc
atctatgccttgggtattcgtcatgtgggtgagaccaccgcacgtgatcttgcacgtcat
ttcatgtcgatcgaggccttgatggctgctaatgaggagtcgttgttgtcagtgccagat
gttggccccgtggtggcagcatcggttgcacatttttttgcggagacgcataaccgcgag
gtcattgccgatttactcaaagctggggtgcaacctcaagcaccagaggtggtgaccggt
gcaaatgccgatgttgctgggcagacctttgtgctgacaggcactttgcccacctggacg
cgcgaagaggcatctgctgccattatggcggcaggcggtaaagtcagtggctcagtatct
aaaaaaaccagctacgttgtcgccggtgaggaagctggcagcaaactcagtaaagctgag
tctctaggcgtaccggttatcgatgaggatggcctaaaagctttattggggatagggtaa
DBGET
integrated database retrieval system
