Ostrea edulis (European flat oyster): 125645626
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Entry
125645626 CDS
T09123
Name
(RefSeq) ATP-dependent RNA helicase DHX58-like isoform X2
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oed04054
]
125645626
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125645626
Pattern recognition receptors [BR:
oed04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125645626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
ResIII
Helicase_C
DEAD
RIG-I_C
RIG-I_C-RD
CARD
SWI2_SNF2
SNF2-rel_dom
AAA_19
AAA_22
AAA_7
Yippee-Mis18
TniB
nSTAND3
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
125645626
NCBI-ProteinID:
XP_048727211
LinkDB
All DBs
Position
6:57897098..57908859
Genome browser
AA seq
1058 aa
AA seq
DB search
MAEDTAEPNSSLYYMDSIKCRLDCPEIPTLVKLYRPLIVRCLKVEDVVHYLDGVINTRER
EKIIQREDKKGSTIAMEDLLHTIEDSSHGEKWTKFVNIVERKGYEYVAKALRGEEVNSDV
FKKYTRLLEPHKMNLVERLNPEDLLVTLETQKRVITTTDREQIKAEMKNKGPMAGTIVLL
DRIWRRFENWYRAFLDVLCQKEYKYLVEEIDDEFAEEWDKKIQEGNHPEDINQQCSVDAQ
GQFQNFITPVQCVSDNDEYNLGSSLNINSLVSSGCSRTIKPISVSDDNLDEQVKNAEEIT
GEDVEETTEKEVEITKTKENHANETESNNVYPCKSVEDTTQESTSIEDKEVILDTFEERR
YQNELAEPAKRGQNCLIIAPTGSGKTIVAVKIIQHHLQVKTRPKIKKIAFVVDKNNLAKQ
QHDAIQRFVDCRLKVISGDTMREEEFTDLSALLTQYDVFVITAQMLVNAMHKRDVSIESF
TLLIFDECHHCHGGHSFYKTMIPYHDKKHGHLEDQIDLPQIVGCTASIGVGKAKNVDQTV
EHVKVMMANLDADVLVSVQRNRQELAEKMNTPEQSIVKIQTRKTDEFGTRIKILMTKTEE
CLKEAADEMDDKYAANPPTTKGNEQYTQWLQDVLLKAVAKVHDPTLSRSLYTARNYLKIY
NEGLILYSYARATDCLNAIIENFEELPKPAKTATKVEQHLKSLFENEIENLKVCTTDKRK
SEENPLLLKLKEIIVDTYHNESDMRGIVFVRTRPLADILASWMNETDDLKHIKAKKCTGA
QAQRTDGGMTKVKQKETIDLFRKGDFKLIFATTIAEEGLDIKECNLVVRYDYAGNPISQI
QAKGRGRAENSRFYILASEDKSVAEREWTNSLKEPMMEDAMLIVQQEIATNNERFQLQKQ
ELQRLAKRQREAAAQNKGVREVPDGQYVLRCLKCKEYMCLSGELRKLGSNYACIGQDFKD
HVFCKKSEQVKYDGKNLKVGIGKVGCKECREKIGVVALYKEILFPVLQIKSLKIEDDMKR
GDNVKKWKTVEERYFKVPPISLVDMEKISEAERLIDMD
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggatactgcggaaccaaatagttctctgtattacatggatagcattaaatgc
agacttgattgtcctgaaatacccactctagtcaaattatacagaccactcattgttaga
tgtctgaaggtcgaagatgttgtacattacctggatggtgtaatcaatactcgagaaaga
gagaaaatcattcagagggaggataaaaaaggctcaacaattgcgatggaagatctatta
catactatagaggatagcagtcacggcgaaaagtggacaaaatttgtgaacattgttgaa
agaaaaggttatgaatatgtggccaaggctttaaggggcgaggaagtgaatagtgatgtt
tttaagaagtatacaaggcttcttgaaccacataaaatgaatcttgtcgaaagattgaac
ccagaggatttactggtaacgttagaaacccagaaaagggtcataaccactacagacaga
gaacagataaaagctgaaatgaaaaataagggtcctatggctggaacaatcgttctttta
gacagaatatggagaaggtttgagaactggtacagggcattcttagatgtgctttgtcag
aaagaatacaaatatcttgtggaggagattgatgatgaatttgcagaagaatgggacaaa
aaaatccaggaaggaaaccatcccgaagatatcaaccaacaatgttctgttgatgcacaa
ggccagtttcaaaatttcattacccccgtccaatgcgtctctgacaatgacgagtataat
ctgggatcatcactcaatatcaactccctcgtctcttccggttgttcaagaaccatcaag
ccaatatccgtatcagatgacaatcttgatgaacaagtcaaaaacgcagaggaaattact
ggagaagatgtagaggaaactactgagaaagaagtagaaattacgaaaaccaaagaaaat
catgccaatgagaccgaatcaaacaatgtttacccgtgtaaatcagtagaggacaccacg
caagaatctacttcaatagaagataaagaagtaattctagatacatttgaggaaagaagg
taccagaatgagttggctgaacctgctaaacgaggccaaaactgcttaataatagctcca
actggaagtgggaaaacaatcgttgctgtcaaaattatccaacatcacctacaagttaag
accaggccaaaaatcaagaaaattgcttttgtcgttgacaaaaacaacttggccaaacag
cagcatgatgcaattcagcgtttcgtcgattgccgattgaaggtaatatctggggatacc
atgcgcgaagaggaatttacagatctgtcggctctcctcacacagtatgacgtctttgtg
ataacagcccaaatgctcgtgaatgcaatgcataaaagagatgttagcattgaatctttc
acactcctgatctttgatgaatgccaccattgccatggcgggcattcgttctataaaacc
atgattccttaccatgacaagaaacacggtcacctggaggatcagatagacctaccgcag
attgttggttgcacggcttctattggcgttggcaaagctaaaaacgtagatcaaaccgtg
gagcatgttaaagtaatgatggccaatcttgatgcagacgtcctggtatctgtacaaaga
aataggcaggaattggcagagaaaatgaatacaccggagcaatctatcgtgaaaatacaa
actcgaaagacagatgaatttgggacaagaataaagatattaatgacgaagacggaagaa
tgtttgaaagaagcagcagacgaaatggatgataaatatgcggccaatcccccaactaca
aagggaaatgaacaatacactcaatggctacaggatgttcttttaaaagcagttgcaaaa
gttcatgaccctaccctgagtcgctctttatatacagcaagaaattacttaaagatttac
aacgaagggttgattttgtactcatacgccagagcgacggattgtttgaatgccatcatc
gaaaactttgaggaacttcctaagccagctaaaacagcaacgaaagtagaacaacactta
aagagtctatttgaaaatgagatagaaaacctaaaggtctgcacaacagacaaaagaaag
agtgaagaaaatccccttctactaaaacttaaagagatcattgtggatacttatcataat
gaatcagatatgagaggaatagttttcgttcgcacgcgcccgctcgcagatatccttgca
tcttggatgaacgagactgatgaccttaaacacattaaggcaaaaaaatgtactggagct
caggcgcaaagaactgatggcggaatgactaaagtgaagcagaaagaaaccattgatttg
tttcgaaagggagactttaaattgattttcgcaacaacaattgctgaggagggattggac
atcaaagaatgtaaccttgttgtaagatatgattatgctggaaacccaatttcgcagatt
caagccaaaggacgagggcgtgctgaaaacagccggttctatattctggcatcagaagac
aaaagtgttgcagagagagagtggacaaattctttgaaagaacccatgatggaagatgct
atgttgatagttcagcaagaaattgctacaaacaatgaaagattccagcttcaaaaacaa
gagttgcagcgtttggcaaaaagacaacgagaagctgcagcccagaacaaaggcgtgaga
gaagttcctgatggacaatacgtactcagatgcctgaaatgcaaagaatacatgtgtctc
tccggtgaactgagaaaattagggtctaattacgcatgtattggtcaagattttaaggat
cacgttttctgtaagaaaagtgaacaagtgaagtacgatgggaagaatttgaaggtgggc
ataggaaaggtaggatgcaaggaatgtcgggaaaaaattggagtcgtcgctctttacaaa
gaaatcctgtttcccgtcttgcaaattaagtctctaaaaatagaagatgacatgaaaaga
ggggacaacgtaaaaaagtggaaaacggtggaggaaaggtatttcaaagtacctcctata
tctctggtagatatggaaaaaatctcagaagcagaacgcttgattgatatggattga
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