Ostrea edulis (European flat oyster): 125646064
Help
Entry
125646064 CDS
T09123
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04120
Ubiquitin mediated proteolysis
oed04140
Autophagy - animal
oed04144
Endocytosis
oed04517
IgSF CAM signaling
oed04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125646064
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125646064
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125646064
04140 Autophagy - animal
125646064
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
125646064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oed04131
]
125646064
04121 Ubiquitin system [BR:
oed04121
]
125646064
Enzymes [BR:
oed01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125646064
Membrane trafficking [BR:
oed04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
125646064
Ubiquitin system [BR:
oed04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
125646064
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_4
TRAF3_RING
zf-RING_UBOX
U-box
zf-RING_5
zf-rbx1
RING_XB3-XBAT31
zf-ANAPC11
zf-C3HC4_5
DUF1244
zf_UBZ
IBR_1
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
125646064
NCBI-ProteinID:
XP_048728143
LinkDB
All DBs
Position
6:complement(61005624..61026146)
Genome browser
AA seq
603 aa
AA seq
DB search
MASERPVSSGLYDYPNEQRHSSPVSSGSFTSGEGLSGREEGYDYEFIIRDEKYDCPICLL
VLREPQQTTCGHRFCKNCINKWLKESDQRCPIDNMPITESQLFPDNFAKREILGLSVKCP
NSKEGCQVIETLKNIQKHLDECEYVPIPCPNKCSHILLRKDIHEHLSHICHKRTIICKQC
RSEILAENVQEHMEELCPLAMVKCPYCAMELMREQLQRHFDHDCMRKAIDCVYLKLGCNV
GKIPRSEMGKHLQENLHQHMQLMCQALTLIYRRLNIPSLTQLGQSHSLPERTENFSSQER
RMLEDIGNGLGTATSLLQISDAPTYVAPQAGPHSLESMRSLDVSHRNMRGVSQGNEERLG
SERTQIDTELTYTSNPSNNLEGFNRVPMFDDEFQSLKSQNISQDESLARHELLLLDMKHT
TEAYEKNNAVLVKKVRSLENAINDFEGRNCNGVYFWRIKNYSKFRSEAELGEVTAIHSPA
FYSNCFGYRICIRANLNGVDSARGSHLSIFVHFMQGEFDDILEWPFSGRIMLSVLDQNPT
CELRSHVVETLLAKPTLAAFQRPTTPRNHKGFGYMEFLPLSVLDNSTYIRNDTLIIKAHI
IPT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagaacgaccagtgtcatctggtctttatgactatcctaacgaacaacgccac
tcatcgcccgtcagttccggtagctttacctctggcgaggggctctctgggcgggaggaa
ggatatgactacgaatttatcataagggacgaaaaatacgactgtccaatatgtctcctc
gttttacgagagccacagcaaacaacatgtggtcatcgtttctgcaagaactgcattaac
aagtggctgaaggagtctgatcagaggtgcccaatcgataatatgccgataacagagtcc
caacttttcccagataactttgctaaacgggaaatcctaggtcttagcgtaaaatgtcca
aacagtaaggaaggatgtcaagtgatagagaccttgaaaaacatccagaaacatcttgac
gagtgtgaatatgttcccataccgtgtccgaacaaatgcagtcacattctcctacggaaa
gatattcatgagcatttatctcatatttgtcataaaagaaccattatatgtaagcagtgc
agatccgaaatactagcggaaaatgttcaggaacatatggaagaactatgtccccttgca
atggtcaaatgcccgtattgtgcaatggaattaatgagagaacagcttcagcgtcatttt
gatcatgactgtatgcggaaagcgattgactgcgtgtatttaaaattaggttgtaatgtt
ggaaagattcctagaagcgaaatgggaaagcatttacaagaaaacttgcatcaacatatg
cagctgatgtgtcaagccttgactctgatctacaggcgcttaaatattccatcactgacc
cagctaggacagagtcattcattaccagagcgaacagaaaatttcagcagccaggagagg
agaatgttagaggatatcgggaacggactgggcactgcaactagtctgctgcaaatttct
gatgctcctacgtatgttgcacctcaggcaggaccacattcccttgagagcatgcgatca
ctggatgtgagtcatcgaaacatgcgtggcgtgtcccagggcaacgaggaaaggttgggt
agtgaaagaacccagattgatacagaactgacgtatacctcaaatccctctaataaccta
gagggcttcaacagagtcccgatgtttgatgatgaattccagtctctaaaaagccaaaac
atatcacaagacgaaagtctagcgagacacgagttactgttattggatatgaaacataca
acagaagcatacgagaaaaacaatgcggtgttggttaaaaaggttagaagtttagaaaat
gctattaatgatttcgaaggacgaaattgtaatggagtatatttctggagaattaagaat
tattccaagttcagaagcgaggctgagttaggggaagtcacggctatacacagtccggcg
ttttattctaattgctttggatatagaatatgtattcgagctaatctaaacggagttgat
tccgcccgtggaagccatctatccatattcgtacattttatgcaaggagaatttgacgat
attcttgaatggccgtttagtgggcggatcatgctgagcgttctcgatcaaaaccctact
tgtgaactaagatcacatgttgtagagactctgctcgccaaaccaactttggcggccttt
cagcgaccgaccaccccccgtaatcataaaggcttcggatacatggaattcctaccccta
agtgttttggataactctacatacattagaaatgatacattgataataaaggctcacatt
atcccgacgtaa
DBGET
integrated database retrieval system
