Ostrea edulis (European flat oyster): 125646064
Help
Entry
125646064 CDS
T09123
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04120
Ubiquitin mediated proteolysis
oed04140
Autophagy - animal
oed04144
Endocytosis
oed04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125646064
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125646064
04140 Autophagy - animal
125646064
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
125646064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oed04131
]
125646064
04121 Ubiquitin system [BR:
oed04121
]
125646064
Enzymes [BR:
oed01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125646064
Membrane trafficking [BR:
oed04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
125646064
Ubiquitin system [BR:
oed04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
125646064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_4
TRAF3_RING
zf-RING_UBOX
U-box
zf-RING_5
zf-rbx1
RING_XB3-XBAT31
zf-ANAPC11
zf-TRAF_2
DUF1244
zf_UBZ
IBR_1
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
125646064
NCBI-ProteinID:
XP_048728143
LinkDB
All DBs
Position
6:complement(61005624..61026146)
Genome browser
AA seq
603 aa
AA seq
DB search
MASERPVSSGLYDYPNEQRHSSPVSSGSFTSGEGLSGREEGYDYEFIIRDEKYDCPICLL
VLREPQQTTCGHRFCKNCINKWLKESDQRCPIDNMPITESQLFPDNFAKREILGLSVKCP
NSKEGCQVIETLKNIQKHLDECEYVPIPCPNKCSHILLRKDIHEHLSHICHKRTIICKQC
RSEILAENVQEHMEELCPLAMVKCPYCAMELMREQLQRHFDHDCMRKAIDCVYLKLGCNV
GKIPRSEMGKHLQENLHQHMQLMCQALTLIYRRLNIPSLTQLGQSHSLPERTENFSSQER
RMLEDIGNGLGTATSLLQISDAPTYVAPQAGPHSLESMRSLDVSHRNMRGVSQGNEERLG
SERTQIDTELTYTSNPSNNLEGFNRVPMFDDEFQSLKSQNISQDESLARHELLLLDMKHT
TEAYEKNNAVLVKKVRSLENAINDFEGRNCNGVYFWRIKNYSKFRSEAELGEVTAIHSPA
FYSNCFGYRICIRANLNGVDSARGSHLSIFVHFMQGEFDDILEWPFSGRIMLSVLDQNPT
CELRSHVVETLLAKPTLAAFQRPTTPRNHKGFGYMEFLPLSVLDNSTYIRNDTLIIKAHI
IPT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagaacgaccagtgtcatctggtctttatgactatcctaacgaacaacgccac
tcatcgcccgtcagttccggtagctttacctctggcgaggggctctctgggcgggaggaa
ggatatgactacgaatttatcataagggacgaaaaatacgactgtccaatatgtctcctc
gttttacgagagccacagcaaacaacatgtggtcatcgtttctgcaagaactgcattaac
aagtggctgaaggagtctgatcagaggtgcccaatcgataatatgccgataacagagtcc
caacttttcccagataactttgctaaacgggaaatcctaggtcttagcgtaaaatgtcca
aacagtaaggaaggatgtcaagtgatagagaccttgaaaaacatccagaaacatcttgac
gagtgtgaatatgttcccataccgtgtccgaacaaatgcagtcacattctcctacggaaa
gatattcatgagcatttatctcatatttgtcataaaagaaccattatatgtaagcagtgc
agatccgaaatactagcggaaaatgttcaggaacatatggaagaactatgtccccttgca
atggtcaaatgcccgtattgtgcaatggaattaatgagagaacagcttcagcgtcatttt
gatcatgactgtatgcggaaagcgattgactgcgtgtatttaaaattaggttgtaatgtt
ggaaagattcctagaagcgaaatgggaaagcatttacaagaaaacttgcatcaacatatg
cagctgatgtgtcaagccttgactctgatctacaggcgcttaaatattccatcactgacc
cagctaggacagagtcattcattaccagagcgaacagaaaatttcagcagccaggagagg
agaatgttagaggatatcgggaacggactgggcactgcaactagtctgctgcaaatttct
gatgctcctacgtatgttgcacctcaggcaggaccacattcccttgagagcatgcgatca
ctggatgtgagtcatcgaaacatgcgtggcgtgtcccagggcaacgaggaaaggttgggt
agtgaaagaacccagattgatacagaactgacgtatacctcaaatccctctaataaccta
gagggcttcaacagagtcccgatgtttgatgatgaattccagtctctaaaaagccaaaac
atatcacaagacgaaagtctagcgagacacgagttactgttattggatatgaaacataca
acagaagcatacgagaaaaacaatgcggtgttggttaaaaaggttagaagtttagaaaat
gctattaatgatttcgaaggacgaaattgtaatggagtatatttctggagaattaagaat
tattccaagttcagaagcgaggctgagttaggggaagtcacggctatacacagtccggcg
ttttattctaattgctttggatatagaatatgtattcgagctaatctaaacggagttgat
tccgcccgtggaagccatctatccatattcgtacattttatgcaaggagaatttgacgat
attcttgaatggccgtttagtgggcggatcatgctgagcgttctcgatcaaaaccctact
tgtgaactaagatcacatgttgtagagactctgctcgccaaaccaactttggcggccttt
cagcgaccgaccaccccccgtaatcataaaggcttcggatacatggaattcctaccccta
agtgttttggataactctacatacattagaaatgatacattgataataaaggctcacatt
atcccgacgtaa
DBGET
integrated database retrieval system
