Ostrea edulis (European flat oyster): 125648370
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Entry
125648370 CDS
T09123
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oed04054
]
125648370
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125648370
Pattern recognition receptors [BR:
oed04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125648370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
CARD_2
Helicase_C
RIG-I_C-RD
RIG-I_C
CARD
AAA_19
Yippee-Mis18
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
125648370
NCBI-ProteinID:
XP_048731352
LinkDB
All DBs
Position
6:57817933..57846847
Genome browser
AA seq
1157 aa
AA seq
DB search
MASLQSSGPPSSIDTMPSRLDSVEIPTIVKMYRPLIVRCIKYDQIIHSFDRRVMDTRTKE
EIIQTGNREGSTVAMEDILIAIEASDDENKWEQFINIVQDQGYIYLAKVLKGEYVPRHVC
TTYVRMLQRKKMTFVKASFDPSQVLSLLVGHGVLENSDYEQIEAEQRNKGALAATIVLLD
RIWRKHGDWYRLFLTVLCEKKFHHIVKDIDYKFHEEWEKRNHQKQSSEETVHRETPNHQE
KSETAHNEPPNHQEKSEAAHKEPPNHQEKSEAAHKEPPNHQEKSETAHKEPPNHQEKSET
AHKEPPNHREKSETAHKEPPNHQDEKKPIQVSEVHEKYPGPNIAVGAHGKLSPYDASEED
AETREKKTYTDSEVMDYSIGSDLNFDDLLSSDLMKSKDSSEVVEISKQTRERSQANKSVF
TESTTEVKVLYSRNGDPEESLSDDLQRLSKNDIPNKTLKLRQYQLEQAEKPMSGKNCIII
SPTGSGKTYVAIRIIQHHLEEMGKIKKTVFIVDKNNLANQQSEKIRDHVECRLKVISGDS
QREEDFQEIKPLLPQYDVFVVTAQMLVNALIRRDVSIVSFSMLIFDECHHCYGSHPFQQI
MNHYIDVKQELSKEEESQLPQVVGFTASIGVGKAKTVEKATEHVQTIMSNMDAEYLVTVQ
ENKADLGRHVNSPEQFIKEVPIRRRDAFGERVKVLMTTTEMYLEDTDVEVVDRNAVKPPS
SKGNEQYTQWLEETLLKSLAKLTKSEATRSLYTLRKYLEIYNNGLIHHSYARATDALYCI
KSGIENLKLAKNENEIEKRVKALFEEEYVALEECALDRERTAENPLLLKLKDIIIARYAE
ESNMRGIVFVRTRILANILVSWMDSTKELQHIKARKYTGAQAHNIDGGMTKHEQINAIEL
FKDGQFKIIVATTIAEEGLDIRECNLVVRYDYAGNPISMVQARGRGRAENSHFYVLASAE
KCVAERERNNTFKETMMEEAMKKVQQQIDDNHDAFLVKQRELQKVAKRERDVAKRNKSGR
VVQHGQFSLRCLKCSTFLCMSSELRKLLNAHHACISEDIKNSIICKKFSKPGYPGDDIEM
GVGQFNCKECNVKLGTIALYKDIFFPILSIKALKIEDDMEKGDTLKKWNLVEKYFHVPEI
TTEDLENIGKFGRLLEF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtctccagtcgtcaggacccccgagttccatcgatacaatgcctagtcgacta
gacagcgttgagatacctacgattgtaaagatgtatcgccctttgattgttagatgtata
aaatacgaccaaataatccactcttttgaccgccgtgtaatggacacacgcaccaaggag
gaaataatacaaaccggaaatcgagaggggtccacagtagcaatggaggatatcttgatt
gctatagaagcgagtgatgacgaaaacaagtgggaacaattcatcaacatagtccaagac
caaggttacatatacctggcgaaagtcttgaaaggcgaatatgtaccaagacatgtgtgt
acaacatacgttagaatgttgcaacgaaagaaaatgacatttgttaaagcaagtttcgac
cctagccaagtccttagcttactggtgggacatggtgttcttgagaatagcgactatgaa
caaatagaagctgagcaaagaaataaaggcgctttagcagcaactattgttctcttggac
agaatttggaggaaacatggggattggtatagattatttcttaccgtactatgcgagaaa
aaattccatcacattgtaaaggatattgactataaatttcatgaagaatgggagaagaga
aaccaccagaagcagtcttcagaagagaccgttcacagagaaacaccaaaccatcaggag
aaaagtgagaccgctcacaacgaaccaccaaaccatcaggagaaaagtgaggccgctcac
aaggaaccaccaaaccatcaggagaaaagtgaggccgctcacaaggaaccaccaaaccat
caggagaaaagtgagaccgctcacaaggaaccgccaaaccatcaggagaaaagtgagacc
gctcacaaggaaccaccaaaccatcgggagaaaagtgagaccgctcacaaggaaccacca
aaccaccaagacgaaaagaaacctattcaggtatctgaagtgcatgagaaatacccaggt
ccaaacatcgcagtaggagcacacggaaaactgtctccttacgacgctagtgaagaagac
gctgaaactcgggagaaaaagacctatacggattcagaagtaatggattatagtattggt
tccgacttgaactttgatgatctcctttcctctgacctgatgaaaagcaaagattcgtca
gaagtagtcgaaatatcaaaacagacaagagaacgtagccaggctaataaatctgtcttt
acagagagcacaactgaagtaaaagttctctatagcagaaatggggatcccgaagaaagt
ctctcagatgacttacagaggttgagcaagaacgatatcccaaacaagacgttgaaattg
agacaatatcaactggaacaagcagagaaacctatgagtgggaaaaattgtataattatt
tcaccaaccggtagtggcaaaacgtatgtggctatcagaataattcagcatcacttggaa
gaaatggggaaaataaagaaaactgtgttcatcgtggacaaaaacaacttagcaaaccaa
cagtcagagaaaataagagaccacgtagaatgtcgactgaaagtgatatcaggcgattct
cagagagaagaagattttcaagaaataaagccacttcttccgcagtatgatgtttttgta
gtcacagctcaaatgctggtcaatgccctgataagaagggatgtcagcatcgtgtccttt
tctatgcttatttttgacgaatgccaccactgttatggaagccatccatttcaacagata
atgaatcattatatcgacgtcaagcaggaattatcgaaggaagaagaatcccagcttcct
caagtagtcggttttacggcgtccattggagtaggaaaagccaaaacagttgaaaaggct
acagaacatgtacaaacaatcatgtctaatatggacgccgagtacctggtgacagtacag
gaaaacaaggctgatttgggaagacatgtgaactcgccagaacaattcatcaaagaggta
cctatacgtcggagggatgcgtttggagagcgtgtaaaagtgctaatgactacaactgaa
atgtatttggaagacacagacgtcgaggttgtggacaggaacgctgtaaaacccccctca
tcaaaaggcaatgagcagtatacccagtggttggaggaaacccttttgaaatcattagca
aagcttaccaaatctgaagcaactcgatcgctgtatactctaaggaaatatttagagata
tacaacaatggcctcatccatcattcatatgcaagagcaactgatgctctgtattgcatt
aaatctggcatagagaaccttaaattagctaaaaacgaaaatgaaatagagaagagagtt
aaagcgttatttgaagaggaatatgtagcattagaagaatgcgccttagacagagaaagg
accgcagaaaatcctcttctactgaagctaaaagatatcataatagccagatatgctgaa
gaatcaaacatgagaggaatcgtctttgtgcgaactcgtattcttgcaaatattcttgtt
tcatggatggatagcacaaaggaattgcaacatataaaagcccggaaatacaccggtgct
caggctcacaatatagatggaggtatgacaaaacatgaacagataaatgcaatcgagctc
tttaaagatggccagttcaaaatcatcgttgcaaccactattgcagaagagggattggat
atcagagagtgtaatctcgttgtaagatatgactacgctggaaatcctatttctatggtg
caagcaagaggtcgaggtcgcgcagaaaacagccatttctatgttttggcttctgcagaa
aaatgcgttgctgaaagagaaaggaacaacactttcaaagaaacgatgatggaggaagct
atgaaaaaggttcagcaacaaattgatgataatcacgatgcgtttcttgttaagcaacgt
gagttacaaaaagtggcaaaaagagaacgtgatgtagcaaaacgaaacaagagcggcaga
gtcgtacagcatggacagttttcactgaggtgtttgaaatgtagcacatttctgtgcatg
tccagtgagctacgaaagttgctgaatgcccatcacgcttgcattagtgaagatatcaag
aacagcatcatatgcaaaaagttttccaaaccaggttatcccggagatgatatagaaatg
ggagtcggtcaatttaattgcaaagaatgcaatgtgaaattgggaaccattgctctgtat
aaggacatcttctttccgatattgagcatcaaagccttgaaaatcgaagatgatatggag
aaaggtgatacgttgaagaagtggaacttggtagagaagtatttccatgtgcctgagatt
acaacagaagatcttgaaaacattgggaaattcggcagacttctcgaattttga
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