Ostrea edulis (European flat oyster): 125648371
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Entry
125648371 CDS
T09123
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oed04054
]
125648371
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125648371
Pattern recognition receptors [BR:
oed04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125648371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
ResIII
RIG-I_C-RD
DEAD
RIG-I_C
Helicase_C
CARD
Yippee-Mis18
SWI2_SNF2
IstB_IS21
AAA_19
nSTAND3
NACHT
AAA_30
AAA_22
RMC1_N
Sigma54_activat
DUF6759
AAA_11
Motif
Other DBs
NCBI-GeneID:
125648371
NCBI-ProteinID:
XP_048731354
LinkDB
All DBs
Position
6:complement(57806290..57818332)
Genome browser
AA seq
1127 aa
AA seq
DB search
MEDCCGPEPMSSLSALNSITCTLDTPEIPKLIELYRPLIVQCVSGLELVSHLSDVIDPRG
RQEVRQTGKNCGSIQSMDCLLNLLLDSEKPNKWNKFVEALEANEYRYVARALKGGEVKSD
VFKKYRKLLLRHNAKLVHRLDPSNLLPDLSSRGLLNNVDIEEIQAEMNNHGKIAGTTVLL
DRVWKRHDDWYHGLLEVLCSAGHLTIVENMDIEFAQSWKSQNESDTRTSFGTSAMKPISI
LEDYTSDSGPPQNSFANQSIPPADLSISEESELTLDSMLSNCDLEEEDQIKREKREAQDN
FQRQYQANSKSKSHAKESLPDLALPVGKMPMPYSLSNSDTPLGREISSMSDRPSGTDFTS
VSGEYSGNLSSIHSSTVDKLLDSIGNSVDDIIQREGGSRPNIVGPELDVQSVDGNNSDSS
SDEDAIPAKQLQLRNYQLELARAALDDKNCIIVAPTGSGKTHVAMKIIQNHREKRRRLHI
TKVAFLVEQSALAEQQGKVCKEFLACKVKVITGEKQRTESLQNLSCWIQQKDILVITSQI
LVNALAVGDVRIEDFSLIIFDECHHSHAKHPYNQIMSHYLDLKLEDRHKQLPQIVGLTAS
VGVGKAKNEEKAMEWIYSMMANMDAEELSVVEDNRTELAQHVNIPEQYVKKTPHRKKNDF
GRTIEGIMAAIQKWMINSKHSTQLGDQSILKPPAARGNDQYTQWLSRLWKEEAKIVDEKA
RRFIHTCRVYLDMYNKALIIYTDARASDSLAFIREELKKWDEHLIADDTDKKLKSFFEKS
QANLQINADDPNHDNPKLLELQKLVINAFATVPDSRGIIFVRTRDLVKAIHRWMEETEDL
RQFKPVMFTGAQAKCNAGGMTKVQQTDALTLFKDGKHKIVIATSVAEEGLDIQKCNLVIR
YSYVSNEIAMVQARGRGRRENGKYYVVAAQGDKTAEREELNMIREAMMNRAIEMLREKFR
TNRRKCMDIILFMQKKSKTERDLAAQNKDGQIVRQGEYVLRCEKCSKYICMSNEVRKIQD
AHHACICNDIKERVVGKRLPKPQFQDEDLKCAVGKLLCRSCGSDLGNVSIYKNAQFPILK
IERFSLEDSMGRRDVKKRWKNAPFDVPSITAEDILQRSQGEKLIEMI
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggaggactgctgtggccccgagcctatgagttcgctgtccgctttgaatagtattacg
tgtaccctggacactccagaaattcccaaacttattgagctgtatagaccactaatcgta
caatgtgtaagtggattggaactagtgtctcatctcagtgatgtcatcgaccccaggggt
cgtcaagaagttcgccaaactggtaaaaactgcgggagcattcaatcgatggactgcctt
ttgaatttgttactggatagtgaaaagccaaataaatggaacaaatttgtagaagctcta
gaagcaaatgaatacagatatgttgcgagggcattgaaaggaggggaagtaaaaagtgat
gttttcaaaaagtacagaaaactattattgagacataacgccaaactagttcatcgatta
gaccccagtaatcttcttccagacctgtcaagtcgagggttactgaacaatgttgatata
gaggagattcaggcagagatgaacaaccatggaaaaatagccggtaccacggtgctccta
gacagagtgtggaaacgacacgatgattggtaccatggacttctggaagttttgtgttct
gcagggcatcttacaatagtggaaaatatggacatcgaatttgctcaatcctggaaatca
cagaatgagagtgacacaaggacatcatttggtacgtctgcaatgaaacccatatctatc
ctggaggactacacatcagattcaggtccacctcaaaattcctttgcaaatcaatcaatc
ccgcctgccgatctatcaatttcggaagagagtgaacttactctggattcaatgctctcg
aactgcgatttagaagaagaggaccaaataaaacgcgaaaaaagggaagctcaagataac
tttcaacgccaatatcaggcaaattctaaaagcaagtcacatgcgaaagaatccctacca
gatttagccctccctgtaggaaaaatgcctatgccatactctctctctaatagtgataca
cctttaggaagagagatttcctctatgagtgatcgaccatcgggaacagattttacttcc
gtgagtggggaatactccggtaatttaagtagtatccattcatccactgttgacaagttg
ttagatagcattggaaacagtgtagacgacattattcagagagaaggaggctcccgtccg
aacatcgttggaccagaattagatgtacagtccgtggatggtaacaattcagacagttca
agcgatgaagatgccatacctgctaaacaactccagttgagaaattaccagttagaacta
gccagagcagctctcgatgataaaaactgcatcatagttgctccaacagggagcggaaaa
actcacgttgccatgaaaataatccagaatcacagagaaaaacgtaggcgtctacatatc
acaaaagtggccttccttgtggaacaaagtgcccttgctgaacagcaggggaaagtctgt
aaagagttcttagcctgtaaagtgaaagtcatcactggagaaaaacagagaactgaaagt
cttcaaaatttgtcctgttggatacaacagaaagatatccttgtaatcacctctcaaatt
ttggtcaacgcattagcggtcggagacgttcggattgaggacttttctttgataatattt
gatgagtgtcaccactctcatgcaaagcatccttataaccaaatcatgtcacattatctg
gatttgaaacttgaagacagacacaaacaacttcctcagattgttggcttgacggcatct
gtgggtgtcggaaaggccaaaaatgaggagaaagcaatggagtggatatacagcatgatg
gctaatatggatgctgaagaactaagtgtagtggaagataataggacagaattagcacaa
catgtcaatattcccgagcaatacgtaaagaaaacaccccacagaaagaaaaatgacttt
ggaagaaccattgaagggatcatggcagctatacagaaatggatgatcaattcgaaacat
tcaacacagttgggagaccaatccattttaaagccacctgctgctagaggcaatgaccag
tacacacagtggctaagccgtctatggaaagaggaggccaaaatagtggacgagaaagca
aggcgtttcatccatacctgccgggtctacctggatatgtacaacaaagcactgatcatt
tacaccgacgctcgagcctcggactctctagcattcatcagagaagagctgaaaaagtgg
gatgaacatctcatcgcagacgacactgacaaaaagctgaagtcattctttgaaaagagt
caggcaaatttgcaaataaatgcagatgacccaaatcacgacaacccaaaactccttgaa
ctacaaaaactggttataaatgcttttgcaactgtgccagattcccgtggaattatcttt
gtgagaacacgagatctagtgaaagcaatccatcgctggatggaagagacggaagacctt
cgacaattcaaaccagtcatgttcactggtgcccaagcgaaatgcaacgcaggagggatg
actaaagttcaacaaactgatgccttgacattgttcaaagatggcaaacacaagattgta
attgcaacgtcagtagcagaagaggggttagatattcagaaatgcaacctcgtcattcgg
tactcatacgtcagcaacgagatcgctatggttcaagcaagaggaagaggaagaagagag
aatggaaaatactacgttgtagcagcacaaggcgacaaaacagcagagagggaggaattg
aacatgatccgcgaagccatgatgaaccgtgcaatagaaatgctgagggaaaagttccgt
acaaaccgcagaaagtgcatggatataattctatttatgcagaagaaatccaaaactgag
cgcgatcttgctgcacagaataaagatggtcaaattgttcgccaaggggaatacgtttta
cggtgtgagaagtgcagcaaatacatttgcatgtcaaatgaagttcggaaaatccaggac
gctcaccatgcatgtatttgtaatgacataaaagagcgggtagtaggaaaacgtcttcca
aaaccgcaatttcaggacgaagacctgaagtgtgctgttggtaaactcctctgtcgctcc
tgtgggtctgatcttggaaacgtatctatatacaaaaacgcacaattcccaatattgaag
atagagaggttttcgttggaggatagtatgggaagaagagatgttaagaagagatggaaa
aacgctccgtttgatgtgccctccatcacagcggaagatatactacagaggtcgcaagga
gagaaactgattgaaatgatttaa
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