Ostrea edulis (European flat oyster): 125657636
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Entry
125657636 CDS
T09123
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oed04054
]
125657636
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125657636
Pattern recognition receptors [BR:
oed04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125657636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RIG-I_C-RD
ResIII
CARD_2
RIG-I_C
CARD
Yippee-Mis18
IstB_IS21
AAA_22
AAA_19
AAA_5
Motif
Other DBs
NCBI-GeneID:
125657636
NCBI-ProteinID:
XP_048744285
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All DBs
Position
9:41217818..41247854
Genome browser
AA seq
1268 aa
AA seq
DB search
MDSEGSLKLPSAPLLDKTSLTHPENADSLQLKSSEELGSSLFKEQSTAKDDIKPQRGASN
QEAAAKIVAEDIQRAGKQFIQTSGQLKDGQPKEEAGQYLSMEYSQDNMMSSLEPEDDSVP
HYIRLYRPMIVKCVDCLPLLPQMRDIFDDQGERTRIKTISKTDGTKAGMEEFLNCLETKK
HFPDRWNRFVHAIKEADYEYVSKVLEKQEIIHTDTFTTQARLIDIFAHQLYKKLKPSEIV
PELYARKVLNKEFYDAILLDEKNNGESSATIILIDNIWRCKRDWLYIFLDVLCNHQYEEL
VRVIDDSFLEKRQQKFPDGKDHMTSSKSNADEGSMLEKYQREESEERSKATKSDKLGRKF
SHNSGGPKSDKLGREFSHNSGGPKSDKLEREFSHNSVSPNKEEQDKNSSIKENYLSETFE
AHESVNNLSGNSEQESLDIEFVQLAHNFDNSLSLSHGRTEQTNMKEVDRRNASSNPDDRS
LQSNTNNQSLLSTTDKTSLQSSTDNEMVSMQGVDSLAVRNVCQSLDREVESTTSRPNIIN
SSMGASLLESNKRVNLDDSDDEEDLSVPKEKLELRSYQMELARPSLEGKNSVIVAPTGSG
KTHVALYIIKDHMEKIKSRRHPKVIFLVEQSALAEQQGKQCMTYLPCKVKVITGESQRNE
RMKSLNEWIERRDLLVVTAQILLNALRDGTVNVTDFSLLVFDECHHANDNHSYNMIMNRY
LDIKFQDDEKAKNLPMIVGLTASVGAGKSTEDDKVKRHIEKVMANMDAEVIVTVTENRLE
LAKFVTIPKQRIYKVAKREKNYFGTLLEKLMDATEKHMKNSNYVKLVKNANAVIKPPLEK
GSDQYTQWVSMLWRETAKIQDQAAGRFFDTCRKYLDLYNKALIIYKDARPTDALTFILKE
TKKWEQTVIPDDTENKMKKMFDKTKDMLEKCTVDPKHRNPKLETLKHMIADYFQENPDSR
VIVFVKTRELVKAIETFMKETDELQFLNPIQFVGVQANKERGGMTKVEQDEILRLFREGN
HKVIIATSVAEEGLDIQKCSLVVRYDHVTNEIAMVQSRGRGRAEDSKYVVLASEDSNTVK
KEELNQIREVMMNKAIASLRDELRWSNDAVLRRVREIQREAKIARDIALKNRKAVQANLG
EFKITCNPCRNFICMSTDIKKIENAHHAAINEDIMENVNVESSVPDYEDQNMSVGAGKLF
CKNCGNPLGNITIYKGAQFCILKCEYLIMIDSAGNGVTKKKWKQAPFFVPPLTLPDLEKR
IQGEKYVE
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggattccgaagggagccttaaattacccagtgccccgcttcttgataagacgagtttg
acgcatccagagaacgccgacagtcttcagctaaaaagcagtgaggaactgggcagttct
ctttttaaagaacaatctactgcaaaagatgatatcaagccacaacgtggagcatcaaac
caggaagcggctgctaaaattgtagcagaagacattcaaagagcaggcaagcagttcata
caaacttctggtcagctgaaagatggacaaccgaaagaagaagcggggcagtatttgagt
atggaatacagtcaggacaatatgatgtcctctctggagccggaggatgacagtgtgcct
cactacatacggttatacaggcccatgattgtcaagtgtgtggactgtctgcccttactg
ccccagatgagagatatttttgatgaccaaggagaaaggactaggattaaaactatttca
aaaacagatggaacaaaagctggcatggaagaattcctgaactgtttggaaacaaagaaa
cattttcctgatcgatggaaccgatttgtgcatgctataaaagaagctgattatgagtat
gtgtcaaaagttctggagaaacaagaaataattcacacagacacattcacaacacaggcc
cgtcttattgacatttttgcacaccagctgtacaaaaagttgaaaccgagtgaaattgtt
cctgaactgtatgcaaggaaagtcctgaataaggaattttatgatgcaattttgcttgat
gaaaaaaacaatggtgaatcttcagcaaccatcatactgattgataatatctggcgttgt
aaacgggactggttgtacatcttcttggatgttctgtgcaatcatcagtacgaagaactt
gtgagagtgattgacgactcatttctcgagaaaagacaacaaaagtttccagatggcaag
gatcacatgactagttcgaagtctaatgcggacgaaggttccatgttggagaaatatcag
agagaggagtcggaggaaaggagtaaagcaacaaagtctgacaagctggggaggaagttc
tctcacaactcagggggaccaaagtccgacaagctggggagggagttctctcacaactca
gggggaccaaagtctgacaagctggagagggagttctctcacaactcggtgtcccccaac
aaagaggagcaggacaaaaatagttccattaaggaaaactatctgtctgagacatttgaa
gctcatgaatctgtgaacaatttgagtggaaactcggagcaagaaagtctggatattgag
ttcgttcagctggctcacaattttgataattctttatctctgagtcatgggagaactgaa
cagaccaacatgaaggaagtggacagaagaaatgcatcctccaaccctgatgacaggagt
ttacagtcgaacacaaataaccaaagcctgctctccacaacagacaagacaagcttacag
tccagcacagataatgagatggttagcatgcaaggcgtggattcgctggctgtcagaaat
gtctgtcagagtttggacagggaggtggaatcgaccacaagtcgtccaaacatcatcaac
agtagtatgggtgcaagcctactggaatccaataaacgggtcaacttggatgactcggac
gatgaggaagatctttctgttccaaaagagaagttggagctgagaagctaccagatggag
ctggccaggccttctcttgaaggcaagaactcggtcatcgtggctccgaccgggagtgga
aaaacacacgtggcactgtatattatcaaggatcatatggagaaaataaagtccagacga
cacccaaaagttatttttttggtcgagcaaagtgccttggctgagcaacaaggcaaacag
tgcatgacttatctcccttgtaaagtcaaagtgattaccggggaatcgcaaagaaatgag
agaatgaagagcttaaatgagtggatagaaaggcgtgatttgctggttgtaacagcccag
atcctattgaatgcacttagagatggtacggttaatgtgactgacttttcactgctggtg
tttgatgaatgtcatcacgccaatgacaaccactcctacaacatgatcatgaaccggtat
ctggacatcaaatttcaggacgatgagaaagctaaaaatctacccatgattgtcgggttg
acagcttctgtaggggcggggaagtctacggaagatgacaaggtcaaacgtcacattgag
aaagtgatggcaaatatggacgctgaagtgattgtgacagtgacagagaaccggttggaa
ctggctaaatttgtcactattcctaaacaaagaatctataaagtggcaaaaagagagaag
aattactttggaacactattggagaagttaatggacgctaccgagaagcacatgaagaat
tcaaactatgtgaagttggtcaagaatgctaatgctgtgataaagcctcccctggagaag
ggatctgaccagtacacacagtgggtcagtatgttatggagggagacggccaagatccaa
gaccaggcagccgggcgattcttcgacacctgtcgtaaatatcttgatctttataacaag
gcactgatcatctacaaagatgcacgtccaaccgatgccctgacattcatccttaaagaa
acgaagaagtgggaacagacggtcattcctgacgatacagaaaacaaaatgaagaaaatg
ttcgacaaaacgaaagacatgctggaaaagtgcacagtggatcctaaacacaggaaccca
aaactggaaaccctgaaacacatgattgctgattactttcaagaaaacccagattccaga
gtcatagtattcgtcaaaacgagagaactggtgaaagccatagagacgtttatgaaggag
accgatgagctacagtttctgaaccctatacagtttgtcggtgttcaagccaacaaggag
agaggaggtatgactaaggtagagcaggacgagatcctgagattgtttagggaggggaac
cacaaggtgattatagctacctctgtagcagaagagggactggacattcagaagtgcagt
ctggtggtgcggtatgatcatgtgaccaacgaaatcgccatggtgcagtcaagaggaaga
ggaagagcagaagacagcaagtatgttgttttagcgtcagaggatagcaacacggtgaag
aaggaggagcttaatcagatccgagaagtcatgatgaacaaagccatagccagcctccgg
gatgagctgaggtggagcaatgacgcagtcctcaggagggtgagagaaatccagcgtgag
gccaagatcgcaagggacatagccctcaaaaacaggaaggctgtccaggcgaatctgggc
gagttcaaaataacgtgcaatccgtgcagaaacttcatttgcatgtctactgatataaaa
aagattgagaacgctcatcatgcagccattaatgaggacatcatggagaatgtaaatgtg
gagtcctctgttcccgactacgaagatcaaaatatgagcgtcggagccgggaagttgttt
tgtaaaaactgtggaaatccattaggaaacatcactatctacaagggggcacaattctgc
attctgaaatgtgaatacttgatcatgattgatagcgctggaaatggtgtcacaaaaaag
aagtggaaacaagctccattttttgtacctcctctgactcttcctgaccttgaaaagaga
atccaaggagaaaaatatgttgaataa
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integrated database retrieval system
