Ostrea edulis (European flat oyster): 125658758
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Entry
125658758 CDS
T09123
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oed04054
]
125658758
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125658758
Pattern recognition receptors [BR:
oed04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125658758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
RIG-I_C-RD
CARD_2
RIG-I_C
SWI2_SNF2
CARD
AAA_22
PhoH
AAA_19
Motif
Other DBs
NCBI-GeneID:
125658758
NCBI-ProteinID:
XP_048746109
LinkDB
All DBs
Position
9:67821631..67831350
Genome browser
AA seq
925 aa
AA seq
DB search
MAENINRRFLTEFVEQVEPTDLVDYFSLFKDDDVYKIEQLQKNGEREAACRLFLKLILPE
DDCEAREDNISKLLYALKEEGYKRVLDDHGEAVGEDQAAITEFLEFLISVTKPELMNEID
AASLIPILLSKGYISVKDQQYLNSLQVGDRSEACKELVRRIKKKHKDWAVALFDALKETQ
PNLLTKIDPGASNDELVQKGILPSPENYPAEEPDSEEEYNSDLEKYDTEESEKSVRRKKV
PEMRLRSYQLELAEIALSDRNTIICAQTGTGKTWVALHITKEHLLKNPQGRVVFLARTNA
LVAQQYNLFQKYLPDRKVYHLHTATKECLGMHLIVNDYQVFFLTPQILLNNISNKRISLT
DITLLILDECHHTRKKEPYNNVMKYYLATKRNGETVPQVVGLTATIGVGDSSTEDGALQH
MLRICANLDTLDISTVTKNLEEFQQHVAVPKRETIKMGEKEKDALKALILKNISHIETYL
DTTEVTNNKALQKMWLKKPVKKDGKRYQKWTVHFRNKVSCKLRSNKQLVRVIHAAMTHLA
AYNEALDVNYLMNKEHVTEHLEKKFEEDFKSLDNASEKEREFLQMIIEFCKKVNEMEIEM
NPYLRLMRDKVVELVEEYKEIKGMVFVQTRATAFALALYLTQELGLLGNGGLRAAPFTGT
NSSETSRGMPDSQKNETLENFRKGNVNILVATSVGSEGIDVPDCNFIITYNYTGNEASVI
QMSGRARQTDSTVAHISDQAIQKREEISLQKERLMQEAFRRLNSMLPEDRTRKILKYQEE
IRNAGNPYSPDESIKTKASFRLICFKCHKEAVNSEDIRIYVGQHRVVTNPDFRSRCEFDI
STTPSRYTISIIKCMDCKLKWGTTFRIDQLEVPVLKVTAFLFTMGGEEGRRFKKWGRVDS
HIESINKTELLEMYKENTDVQEDGD
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacatcaatcgtaggtttctgacagaatttgtggaacaggtagaaccgact
gatttggttgactacttctcattgtttaaagatgatgatgtttataaaattgaacagttg
caaaagaatggcgaaagggaagcagcctgccgattgtttttaaagctgattttaccagaa
gatgattgtgaggcgcgagaggataacataagtaagctgctgtatgccctcaaagaggaa
ggttacaagagggtgttggacgatcatggagaagctgttggcgaagatcaggctgctatc
acagaatttttggaatttttaataagtgtgacaaaaccggagttgatgaatgaaatagac
gcagcgtctctgatcccgattttattgagcaaaggctacatcagcgtgaaagatcaacag
tacctgaactcactgcaggtcggtgacaggtctgaggcatgtaaggaactagtcagaaga
atcaagaaaaaacacaaagactgggccgtggcgttgtttgatgctttaaaggagacacaa
ccaaacctgctgacaaagattgaccccggggcaagcaatgatgagcttgtgcagaagggt
atattgccttctccagaaaactatccagcggaagaaccggactctgaggaagaatacaat
tccgacttggaaaaatatgacacagaggaaagtgagaaatcagttagaaggaagaaagta
cccgaaatgaggctgcgttcttaccagttagaactggcggagatagccctcagtgatcgt
aacacaatcatatgtgcccaaacagggacaggaaagacatgggtcgctctgcacatcacc
aaagagcacctgttaaagaaccctcaggggcgagtcgttttccttgcgaggacgaacgca
cttgtggcacaacagtacaaccttttccaaaagtatttaccggacagaaaggtctatcac
ctccacaccgccacgaaggagtgtttaggaatgcatctgatcgttaacgactaccaggtg
tttttcctgactccacaaatcctgctgaacaacatcagtaataagcgaatcagtctgaca
gatataactcttctaattctggacgaatgccatcacactaggaagaaggaaccctacaat
aacgtcatgaagtattatctagccacgaaaagaaatggggaaacggtaccacaggttgtt
ggtctgacggcaactattggagtgggagattccagcacagaggacggtgctttacaacac
atgctaagaatctgtgccaatctcgacaccttagatatctcaacagtcacgaaaaactta
gaagagtttcaacaacatgtagctgtccctaaaagagagacaataaagatgggcgaaaaa
gaaaaagatgccttgaaggcattgatattgaagaacatatcacacattgagacgtacctc
gacacaacagaggtgacaaacaacaaggctttgcagaaaatgtggttgaagaaacccgtg
aaaaaggacggtaaacgctaccagaagtggacagttcatttcaggaataaagtgtcatgc
aaactgaggagcaacaagcaactggtgcgggtaatccacgccgccatgacacacttggca
gcttataatgaagcacttgatgtcaattatttgatgaacaaagaacatgtcactgagcac
ctggaaaagaaattcgaggaggattttaaatctttagataatgcaagcgaaaaagaaaga
gagtttcttcagatgattatcgagttttgcaaaaaggttaatgaaatggaaatcgagatg
aacccgtacctgaggttgatgagagataaggtagtggagctggttgaagaatacaaggag
ataaaaggaatggtttttgtacagacaagggcgaccgcattcgctttggcactgtaccta
acacaggaactgggattactaggaaacggagggttgcgggcggctccgtttacagggacc
aactcatcagaaaccagtcggggtatgcctgatagccaaaagaatgaaacattggagaac
tttcggaaagggaatgttaacatactggtggcaacctctgttggcagtgaaggaatcgat
gttccggattgtaacttcatcattacctacaactacaccggaaacgaggccagcgtaatc
cagatgagtggtcgagctcgccaaacagattccactgttgcgcacatttcagaccaagcg
atccaaaagcgcgaggaaattagtctacagaaagagagactgatgcaagaagcttttcga
cgactaaactctatgcttccagaggatcgaacacgtaaaatcctcaaataccaagaggag
atacgcaacgcaggtaatccttactccccggatgagagcataaaaacgaaagcatcgttc
cggttgatatgtttcaaatgccacaaagaggctgtaaatagcgaagatataagaatatat
gtcggtcaacaccgagtggtgacgaatcccgacttccgatctcgctgtgagtttgacatc
agcacaacgccttcaagatacaccatttcgatcataaagtgcatggattgcaagctaaag
tggggcacaaccttcaggattgatcagctggaagttccggtgttaaaagtgacagcgttt
ctattcacaatggggggagaagaaggccgaaggttcaaaaagtggggcagagtggattcc
cacattgaaagcattaacaaaaccgagctgttggagatgtacaaagaaaatacagatgta
caggaagatggagactaa
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