Ostrea edulis (European flat oyster): 125670467
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Entry
125670467 CDS
T09123
Name
(RefSeq) TNF receptor-associated factor 6-B-like isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04120
Ubiquitin mediated proteolysis
oed04140
Autophagy - animal
oed04144
Endocytosis
oed04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125670467
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125670467
04140 Autophagy - animal
125670467
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
125670467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oed04131
]
125670467
04121 Ubiquitin system [BR:
oed04121
]
125670467
Enzymes [BR:
oed01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125670467
Membrane trafficking [BR:
oed04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
125670467
Ubiquitin system [BR:
oed04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
125670467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-TRAF
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_2
zf-Nse
zf-RING_2
TRAF3_RING
zf-RING_5
zf-TRAF_2
Sina_ZnF
RING_XB3-XBAT31
TRAF2_zf
XAF1_C
TRAFD1-XIAF1_ZnF
Motif
Other DBs
NCBI-GeneID:
125670467
NCBI-ProteinID:
XP_048761613
LinkDB
All DBs
Position
4:complement(18568207..18575252)
Genome browser
AA seq
280 aa
AA seq
DB search
MASRSTQGASTLHPRCYDAALCSELDRKYICPVCLSALHEPMQTSCGHRFCRSCILGVIN
GRPHAKCPVDNVVFKCSTELFEDKAFQREVLSQTVKCGNQNEGCTWAGELRSYEEHESQC
LYISVPCDNGCGVSLPRHALTEHEETCERRHVNCQHCNLHIPFTDLTKHQVLACQNLPVQ
CTLCGQTGICRKDISAHIDITIGDCPLIVVPCQYASFGCQFQDKRRDMIDHYREAANHHI
LLLVRNVSDQEQRISALERQLEQIHLEQEVQKQRINAVSE
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggccagcagaagcactcagggagccagtactcttcatccgagatgttacgatgcagcc
ctctgttccgagctagatcggaagtacatttgtccagtctgtctgtccgctcttcacgaa
cctatgcagacatcctgcggccacagattctgtagaagctgcattttgggtgtcattaat
ggaagaccccatgccaagtgtcccgtggataatgttgtcttcaaatgcagcactgagtta
tttgaggacaaagctttccagagagaagttctgtctcagacggtgaaatgtgggaatcag
aatgaaggctgtacatgggcgggagagctcagatcatacgaggaacacgagagccaatgc
ttgtacatctccgttccctgtgacaacggatgtggcgtctccctcccccgtcacgcgctg
acggagcacgaggaaacctgcgaacgccggcatgtcaactgccagcactgcaacttgcac
atccccttcacagatcttacgaaacaccaggtgctggcttgtcagaatctgcccgtgcag
tgcacactgtgtggtcagacggggatttgtaggaaggacatttcggcccatatcgacata
accataggagactgtcccctcatcgtcgtgccctgtcagtacgcatcattcgggtgtcag
tttcaggacaagcggcgtgacatgattgaccattaccgagaagcagccaatcaccacatt
cttctattggtcagaaacgtctccgaccaggagcagcggatctccgcgctagagagacaa
ctggaacagattcatctggaacaggaagtccaaaagcagcggatcaacgcggtgtcagaa
tag
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integrated database retrieval system
