Ostrea edulis (European flat oyster): 125671384
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Entry
125671384 CDS
T09123
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125671384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oed03400
]
125671384
Enzymes [BR:
oed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125671384
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125671384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
125671384
NCBI-ProteinID:
XP_056019436
LinkDB
All DBs
Position
4:complement(65164523..65181477)
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AA seq
915 aa
AA seq
DB search
MEEDDIDSKPDITVASKVSFAELCGLLEKISKIHGNDKKKGMLGKFVETWRNFHKDLHKE
NPDTTDSFYSAMRLLLPQLEKQRAAYGIKEHMLAKLLIEVLCLGKDSADSNRLLNYKAPK
AAKGDAGDFAAVAYFVLKNRCPEKGTLTIQEVNDCLDGIATNNAAKKKDLVRKNILKLLT
NMSAIELKWLIRMIVKELKIGLSQTSVFTVYHSDAEEFYNVNNNLEKVCRMLRDKSVRMH
EIGIEVFSPFTPMLGERAAPDQVEKLMGGKPYIVETKFDGERILLHKQDGEYKYFSRSGN
EYTSTFGSNQYDGNLTPFIHDCFQSSVTSCILDGEMIGYDAATNTFATKAMNTDIKHQRE
EGYQPCYYAFDLIMLNDRVLTNQPLKERLESLKTVFNEKEGRFLLSKHAEASTNQECAEA
LNEAIDGREEGIMVKNPDSVYRPNTRKGGWFKIKPEYVGGLMDELDVLVVGGFFGVGHRS
GMMSHFLCALAVPEEDGSHPTVFHSFCKVGSGYSKKELAEFNKKLADHWKVFNKKNPPSS
IILASGFKEKPDAYIEPENSCIVQIKAAEIIDSDRFKTGFTLRFPRVEKFRDDKSWHECM
TVPEVKEMKDRAGGKLAGGKVELREEDEPTKKKRKIVTHVIRPTLGAQFRAADLSNITQT
SSMFEGKEFCVINGPPSLGKPAIEKKVVEFGGSVVQNPGTTTFCVLTEKVVMKVTNLMKR
DLYDIVKVDWFKRCMDAQKFISWAPADMIHTSAKTQMTLKKDYDEFGDSYTQDTSPEQLQ
YTFKHMENCDTSITSEEMAEVEERYFPEDSPYGLFRTCRFYLDNKLVIDDTSTQIKNSSL
DFVALELRFFGGTVSDSLSDEVSHVMVDKRDLSRVQELKQERRKRSRKFHIVTEEWLRQC
LEEGSLCSERQFEPS
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatgacatagactcaaaaccagacattacagtggcatccaaggtgtctttt
gcagaattatgtggtcttctagaaaaaatttctaaaatccatggcaatgataaaaagaaa
ggaatgttgggaaaatttgtggagacatggcgtaatttccacaaggatctacataaagag
aatccagacactactgattctttctactcggcgatgagacttctgctaccacagcttgag
aaacagcgagctgcctatggtatcaaggagcatatgttggctaagctattgattgaagta
ttgtgcttgggaaaagatagtgccgattcaaacagactgctgaactacaaagctccgaaa
gctgccaaaggcgatgcgggtgattttgcagctgtggcgtattttgttctcaaaaatcgc
tgtcctgaaaaggggacactaactattcaggaagtcaacgattgtctggacggcattgca
acgaacaacgcagcaaagaagaaggacctcgttcgcaaaaacattctaaagctcctgacc
aacatgtctgccattgaattgaagtggctcatcaggatgattgtcaaggaactgaaaatt
gggctcagtcagacatcagtattcactgtgtatcactctgatgcagaggaattctataat
gttaacaacaaccttgaaaaggtttgtcgaatgttgagggacaaaagcgtgagaatgcat
gagattggtatagaagtgttctctccctttactccaatgcttggtgagagggcagcacca
gaccaggttgaaaaattgatgggtggcaagccttatattgtagaaacaaaatttgatgga
gagagaatcttgctgcacaaacaggatggagaatacaaatatttttctaggagtggtaat
gagtacacaagcacctttgggtccaatcagtatgatggaaacctgactccattcattcat
gactgcttccagtcatctgtgacgtcctgtattcttgatggagaaatgataggttatgat
gctgcaacaaacacatttgccactaaggccatgaacactgacattaagcatcaaagagag
gaaggatatcagccatgttattatgcttttgaccttatcatgctaaatgatcgtgtcctt
accaaccaacctttgaaggagcgactggaatcactgaagactgtgtttaacgagaaagaa
gggcggtttcttctcagtaaacacgcagaagccagtactaatcaagaatgtgcagaagca
ttgaacgaggcaattgatggcagagaggagggaataatggtgaagaatccagactctgtg
taccgacccaacaccagaaaaggaggctggttcaaaattaagccagagtatgtagggggt
ctgatggatgaactagatgtcttagtggtggggggattctttggggtgggtcatcgtagt
gggatgatgtcacacttcctgtgtgctctagctgtcccagaggaggatggaagtcaccca
acagttttccattccttctgcaaggttggatcaggatactcaaaaaaggaactggcagag
ttcaacaagaaattagcagatcactggaaggttttcaacaagaaaaacccaccgtcttca
atcattttggcttcaggattcaaagagaaaccagatgcttatattgaacctgaaaattca
tgcattgttcagataaaggcagcagaaatcattgacagtgacaggtttaagaccggattt
acactgaggttcccacgtgtggagaaattccgagatgacaaatcgtggcatgagtgtatg
accgtgcctgaggtcaaagagatgaaagatagagctggagggaaacttgctggaggaaaa
gtagaattgagagaagaagatgaaccaacaaagaagaagcgtaaaattgtaactcatgtg
atcaggccgacactgggagcacagttcagagctgcagacctatccaacatcactcaaact
tcatcgatgtttgaaggaaaagaattttgtgtgatcaatggtccgccatcccttggtaag
ccagcaattgagaaaaaggtagtggagtttggtggttctgttgttcaaaacccaggtact
acaacattttgcgtactgactgaaaaggttgtaatgaaggtgacaaacttaatgaagcgt
gacttgtacgatatagtgaaggtggactggttcaagagatgcatggatgcacagaaattt
atttcatgggcaccggcagacatgatacacacctcagcaaagacgcagatgactcttaag
aaagattatgacgagtttggtgatagttacacgcaggacacctctccagaacaacttcag
tacaccttcaaacacatggaaaattgtgatacgtccatcacatcagaagaaatggcagaa
gtagaagagagatatttccccgaggattctccatatgggttgtttaggacatgcagattt
tacttggataacaaacttgtgatagacgacacatccacgcaaatcaagaactcatctcta
gattttgtggccctggagctgagatttttcggtggaacagtctcagactcgctcagtgat
gaagtctcacatgtgatggttgacaaaagagatttaagtagagtgcaagagctcaaacag
gagagaagaaaaagaagtagaaaatttcatattgtgacagaggaatggctccgtcagtgt
ctagaggaaggtagtttgtgttctgaaagacaatttgaaccttcttaa
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