Ostrea edulis (European flat oyster): 125672038
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Entry
125672038 CDS
T09123
Name
(RefSeq) guanine nucleotide exchange factor C9orf72-like
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125672038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oed04131
]
125672038
Membrane trafficking [BR:
oed04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
125672038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
125672038
NCBI-ProteinID:
XP_048764052
LinkDB
All DBs
Position
4:56700286..56723159
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AA seq
486 aa
AA seq
DB search
MSSSKNIKQMIRNISAGVIQIGSQENAEPSGSFQDGITPLSPSSKFTESKINIPGQNLIK
YMMLSHWDNILGPRVVHVWNMGTTSLDMILLSRISSQSLSGEICREVTNFVDHKLYEIPD
ADVFVTAFIFSALGISGPCLHALSIVIQKADMMFYLNTQQLFQKCFERIIGKFKVILSQV
SMDSTLETTYKEFDELCHPCIANIGYLKKSHFPQKIMLSSTYLCPAHHLDRDFLSCCISS
HLSTFCRSFVIGDKADSVNMMLKTLSLFNLPKERSCSRLVQQNEPQHYHHDMWLQGQVQT
SDQLDLPVSEILYSEYPVTVIDLSQKMVRESPTYSEHVTHSQDQRYNELIGLKYGDTEPS
IPQGELFSLHDKSDTIVLGLLDELDKLPSECGVREAYIQQFNRSIQRKALCIIKYIEGET
NSGTLPFRGDFKKLQKDICILSEGDFRIYLSAAEKLKPGLIWFLYSPKYIREQSNSAMVG
SRPYAR
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttccaaaaatatcaaacagatgattcgtaacatcagtgctggagtaattcag
ataggaagtcaggagaatgcggaacccagtggttcattccaagatggaataactcctctg
agtccctcatccaagttcacggaatcaaagataaacatcccaggacagaatttgataaaa
tacatgatgttgtctcactgggataatatcctaggacctcgagtcgttcatgtatggaac
atgggaaccacatcattggatatgattctgttgtcaagaatcagcagtcagagtttgagt
ggggagatctgtcgggaagtgacaaattttgtagatcacaaactctatgagattcctgat
gcagatgttttcgtgactgcttttattttttcagccctgggcatcagtgggccctgtctt
catgcattgtccatagtgatacaaaaagcagacatgatgttctacttgaatactcaacag
ctgtttcagaaatgttttgaaaggattattggaaaattcaaagtcattcttagtcaggtg
tcaatggactcaacactagaaactacttataaggagtttgatgagctttgtcatccgtgt
attgccaacattggatatcttaaaaagtcacactttccccagaaaattatgttgtcctct
acatatctgtgtccagcccatcatttagacagagacttcctgagctgttgtataagttcc
cacctatctacattttgtcggagttttgtgataggggacaaagcagatagtgttaatatg
atgctgaaaaccttaagtctgtttaatttaccaaaagaaagatcctgttctaggcttgtt
caacagaatgaacctcagcactaccaccacgatatgtggcttcagggccaagtccagact
tcagaccagcttgatttacctgtctctgaaatcctgtacagtgagtaccctgttacagtt
attgatttgtcccagaaaatggttcgggaatctcccacctacagtgaacatgtcactcac
tctcaggatcaacgatacaatgaactaataggtctgaagtacggagacacagaacctagc
attccacaaggagaactgttttccctgcatgataaatctgacacaattgtcttaggacta
ctagatgaactggacaagttgccatcagagtgcggggttagggaggcttatattcaacag
tttaatagaagcatacagcgtaaggctttatgcatcataaagtacattgaaggagaaacg
aattcaggaacacttccatttagaggtgattttaagaaactccaaaaagatatatgcata
ctatctgaaggtgactttaggatctatttatctgctgcagagaagctgaagccgggatta
atctggtttttgtattctcctaaatacattcgggaacaatcaaattctgccatggtagga
agtcgaccttatgctcgctag
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