KEGG   Ostrea edulis (European flat oyster): 125672087
Entry
125672087         CDS       T09123                                 
Name
(RefSeq) actin-5-like isoform X1
  KO
K05692  actin beta/gamma 1
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03082  ATP-dependent chromatin remodeling
oed04145  Phagosome
oed04814  Motor proteins
oed04820  Cytoskeleton in muscle cells
oed05100  Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125672087
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    125672087
  09142 Cell motility
   04814 Motor proteins
    125672087
   04820 Cytoskeleton in muscle cells
    125672087
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    125672087
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oed03021]
    125672087
   03019 Messenger RNA biogenesis [BR:oed03019]
    125672087
   03036 Chromosome and associated proteins [BR:oed03036]
    125672087
   03029 Mitochondrial biogenesis [BR:oed03029]
    125672087
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:oed04812]
    125672087
   04147 Exosome [BR:oed04147]
    125672087
Transcription machinery [BR:oed03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     125672087
Messenger RNA biogenesis [BR:oed03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     125672087
Chromosome and associated proteins [BR:oed03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TIP60 complex
     125672087
    NuA4 complex
     125672087
  Chromatin remodeling factors
   BAF complex
    125672087
   PBAF complex
    125672087
   GBAF(ncBAF) complex
    125672087
   SWR1 complex
    125672087
Mitochondrial biogenesis [BR:oed03029]
 Mitochondrial quality control factors
  Mitochondrial dynamics
   Actin cytoskeleton organization
    125672087
Cytoskeleton proteins [BR:oed04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actins
    Actins
     125672087
Exosome [BR:oed04147]
 Exosomal proteins
  Proteins found in most exosomes
   125672087
SSDB
Motif
Pfam: Actin GerD
Other DBs
NCBI-GeneID: 125672087
NCBI-ProteinID: XP_048764153
LinkDB
Position
4:63025540..63027835
AA seq 387 aa
MQGCPHGVVKMADSDEIAALVIDNGSGMCKAGFGGDDAPRCVFPSIIGRPRHQGVMIGMG
QKDSYVGEEAQSKRGILTLKYPIEHGIVTNWDDMEKVWHHTFYNELRVAPEEHPVLLTEA
PMNPKANREKMLQIMFETFNTPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEG
YALPHAIMRVDLAGRDLTDYMMKIMTERGYSFTTTAEREIVRDIKEKLCYVALDFDDDMM
KSATSSVLEKNYELPDGQVITIGNERFRCPEALFQPSFIGMESTGIHEATYDSIMKCDVD
IRKDLYSNIVLSGGSTMFPGIGDRMSQEIACLAPQNIKVKVVAPPERKYSVWIGGSILAS
LSTFQQMWISKQEYDESGPGIVHRKCF
NT seq 1164 nt   +upstreamnt  +downstreamnt
atgcagggatgtcctcacggtgtggttaagatggctgattccgatgaaatagcggctctg
gtgatcgacaatggctctgggatgtgtaaggctggatttggaggggacgatgctcctcgc
tgcgtgttcccctccattatagggaggccacggcaccagggcgtaatgattggaatgggg
cagaaggacagctacgttggcgaggaggcgcagtccaaacgaggcatcctcactctcaag
taccccatagagcatggcatcgttacgaactgggatgacatggaaaaagtatggcaccac
accttctacaacgagttgcgagtggcacctgaagagcacccagtccttctaacagaggct
ccaatgaatccgaaggcaaaccgagagaagatgctacaaattatgttcgagaccttcaat
acgcctgccttttacgtctccattcaggccgtgttatcgttgtatgcttccggtagaaca
accggaattgtcctcgattcgggtgatggtgtcacccacacggtgccaatctatgaaggt
tacgcccttccacatgccataatgagggtggacttagcgggacgggatttgaccgattat
atgatgaagatcatgacggagcgcggctattcgttcacaaccactgcagaaagggaaatt
gttcgggatatcaaagaaaagctttgctatgtggcgctagacttcgatgacgatatgatg
aaatcggctacaagttccgtccttgaaaaaaactatgaacttcctgacggtcaggtcatc
accattggcaacgagcgcttccgttgtccagaggcattgttccaaccatccttcattggc
atggaaagtacaggtatccatgaggcaacctacgattccatcatgaaatgtgatgttgat
atcagaaaagatctgtactccaacatcgttctctcaggagggtcaactatgttcccaggg
atcggggatagaatgagtcaggagattgcatgccttgctcctcaaaatatcaaggttaag
gttgtggcaccaccagagcggaagtattctgtgtggataggcgggtcgatattggcttcg
ttatccactttccagcaaatgtggatcagcaaacaagagtatgacgaaagtgggccaggg
atcgtgcataggaaatgtttctaa

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