Ostrea edulis (European flat oyster): 125683108
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Entry
125683108 CDS
T09123
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oed04054
]
125683108
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125683108
Pattern recognition receptors [BR:
oed04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125683108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
ResIII
RIG-I_C
RIG-I_C-RD
DEAD
Helicase_C
CARD
Yippee-Mis18
AAA_19
IstB_IS21
IL3
AAA_30
Sigma54_activat
nSTAND3
AAA_22
AAA_11
Motif
Other DBs
NCBI-GeneID:
125683108
NCBI-ProteinID:
XP_055996197
LinkDB
All DBs
Position
6:complement(57856716..57875008)
Genome browser
AA seq
1148 aa
AA seq
DB search
MGEINNDQPDSVLSGMVSIHCTLDTQDIPNLVSLYKPLVVRSAQGIELISYLRDVIDDTA
RQEIRQTNINHGGIASMDCLLMHLESSYHPQKWEKFVVALEKNEYQYVAKALRGGEVPRD
VFVKYRKLLMNHHLNFLRSFNPSDVLFQLNKRKVINDMDKDNIEAEQRTTGNISATNVLL
DRVWRHHQNWYEELLDVLCKDYPYIVKSMDQDFYDRWQSTNKPIEISTEKKEISENEHES
SKLKDVSDVTPQSSSTDDKKSISERKLLSSSMVKEDYLSASGGPQNTLGDRFTPPPDDLG
MMGSSSLTYSLLSNDADGLDDELTHVKKAAQAEYNKNSLDIVKPVEQSSKSLEDFPLRVF
SADQASLSNYQNNSVGIQQPSRYQAEDGSPNSSIVARLLQSIDNCVNDDIQRDGGNPPNI
VGPEYPTTDSESMDGNNESSDEDKYTVPAQQLNLRNYQMELARAALQDKNCIIVAPTGSG
KTHVAMKIIQNHRERREGIHIPKVAFLVEQSALAEQQGKVCKEFLACKIKVITGEKQRTE
SLQNLSCWVQKKDILVITAQILVNALAVGDVQIEDFSLIVFDECHHSHAKHPYNQIMAYH
LDLKLEDRHRQLPQIVGLTASVGVGKAKNTEKAMDWIFKMMANMDAEELCVVEDNRKELA
QHVNIPDQDVVKCQGRKKNEYGRIIDGIMKTIHKWMTQSTQAKELTDQSVLKPPVESGND
QYTQWLSRLWKEEAKIVNEKARRFIHTCRVYLDMYNKALIIHNDARASDSLAFIREELKR
WGEHQIPDEIDKKLKSFFEKSQKILQTCAEDPDHNNPKLLELRKLILKAFNADADSRGII
FVRTRDLVKAIYSWMEETDDLRALKPVMFTGAQAKSSAGGMTKVQQIDALTLFKEGRHKI
VIATSVAEEGLDIQKCNLVIRYSYVSNEIAMVQARGRGRRENGKYFVVATQGDKTAEREE
LNMIREAMMNRAIEMLRERFRRKPRECLDKILNMQKQAKTERDLAAKNKEGVVVRQGQYV
LRCQKCSKYICMSTEVRKIQNAHHACICDDIKDRVFGQRLPRPQFQDEDLKCAVGKLLCQ
SCGSDLGNVSIYKNAQFPILKIEGLLIEDSMGRRDVKKKWKNVPFGIQEITANDIWQRSR
GEKLIDMI
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagataaacaacgaccagccggacagtgtactgtcagggatggtcagtattcat
tgtacactggacacacaagatattccaaatctggtgtctctatataaaccgcttgtagtg
agatctgcccaggggatagagttaatctcttatctgcgagacgtcatcgatgacacggct
cgccaagaaatccgtcaaactaatataaatcatggagggatagcttctatggattgccta
cttatgcatctggaatcaagttaccatccccaaaaatgggagaagtttgtggtcgcattg
gaaaaaaatgagtaccaatacgtcgcaaaagcacttcgaggaggagaggtaccaagggac
gtatttgtcaaataccgaaaactcctaatgaatcaccatcttaacttcttgagaagtttc
aacccctccgatgtcctatttcaacttaataaaagaaaagtgataaatgacatggataaa
gacaacattgaagcagagcaaaggacaacgggtaatataagtgccacaaatgttttactg
gatcgtgtctggcgccatcatcaaaattggtacgaagaattgctagacgtgctttgcaag
gactatccatatattgtcaaaagtatggatcaagatttttatgacagatggcagtcgaca
aacaaacctattgaaatttctacagagaaaaaagaaatttcagaaaatgaacatgaaagt
tctaaactgaaagatgtgtctgatgttacaccccagagctcttctaccgatgataagaaa
tcgatttctgagagaaaacttcttagttcgtccatggttaaagaagactacttgtcagca
agtggtggaccccagaacactctaggagatcgattcaccccaccaccagatgacttaggc
atgatgggcagttcttcgttaacttattcactgttatcaaatgatgccgatggcttagat
gatgagcttacacatgttaaaaaagcagctcaggcagaatacaataaaaattcattggac
atagttaagccagtggagcaatccagcaagtctctagaggatttccctcttcgagttttc
agtgctgatcaagcatcactgtcaaactatcaaaacaatagtgtcggcattcagcaacca
agtagataccaggcagaggacggtagtccgaattcctccattgtagcacgtctactgcaa
agtattgataactgtgtcaatgatgacatacaaagagatgggggcaaccctccaaacatt
gtggggccggagtacccaaccactgattctgaatcaatggatggcaataatgaaagctca
gatgaagataaatacactgttcccgcacaacaactaaacttacgaaactatcaaatggaa
ttggcaagagcggcccttcaagacaaaaactgcatcattgtcgctccaactggaagcgga
aaaactcatgtcgcaatgaaaatcatacagaatcatcgagagagacgtgaaggtatacac
atacccaaggttgcctttcttgttgaacaaagtgctcttgcggaacagcaaggaaaagtg
tgcaaagaatttttggcctgcaaaatcaaggtcatcaccggagagaaacaacgaactgag
agcctgcagaacttgtcatgctgggtacagaaaaaggacattctggtcataacagcccag
attttggtgaacgctttggccgttggtgacgtacaaattgaagatttctccctgattgtg
ttcgatgaatgtcatcattcgcatgccaaacatccttataatcagataatggcatatcat
ctggatctgaaactagaagacagacacaggcaacttccccagattgttggtctgacagcg
tctgttggggttggtaaagcaaagaacacggaaaaagccatggattggatttttaagatg
atggcaaatatggacgccgaggaactctgtgttgttgaggacaacaggaaagaactagct
cagcatgttaacattcccgatcaagatgttgttaaatgtcaaggacgaaagaaaaatgaa
tatggaagaattattgatggtatcatgaagacaattcataaatggatgacccagtctact
caagcaaaagagcttacagaccagagtgtactgaagccgccagtagagagcggcaacgac
cagtacacgcaatggctcagccgactttggaaagaagaggccaaaattgttaatgagaag
gccaggcggtttattcatacctgtagagtgtatctcgatatgtacaacaaagcattgatt
atacacaatgatgcgagagcctcagattctctggcttttatcagagaggaactcaagcgc
tggggagaacatcaaattccggacgaaatcgacaagaaattgaagtcatttttcgaaaag
agtcagaagatcttgcaaacatgcgcagaagacccagatcataataatcctaaactgctg
gaactacgaaaactaattttgaaagcgttcaatgctgatgcggattcccgaggtatcatt
tttgtcagaactcgagatctcgtaaaagccatctacagttggatggaagaaactgatgac
ctgagagcactcaaaccggtgatgttcacgggggcccaggccaagagcagtgcaggagga
atgacaaaggtacagcaaattgacgccttaacgttgttcaaggaaggaagacataagatc
gtaatcgccacatctgtagcagaggagggattggatatccaaaagtgtaaccttgtgatc
cgctattcatacgtcagcaacgaaatagctatggtccaagcaagaggtagaggaagacgt
gaaaatggaaagtacttcgtggtggctacccagggagacaaaacagcagaaagagaagaa
ctcaacatgatcagagaggccatgatgaaccgtgctatcgaaatgctgagagaaagattc
cggagaaaaccaagagagtgtctagataaaatactgaacatgcagaaacaggccaaaaca
gagcgtgaccttgctgcgaaaaataaagagggtgtagtcgtccgacaaggacagtatgtt
ttacgttgtcagaagtgcagcaagtacatatgtatgtcaactgaagtcagaaaaatccaa
aatgcccatcatgcctgtatttgcgacgatattaaagatcgcgttttcggccagcgcctt
cctcgtccacagtttcaggatgaagatctaaaatgcgctgttggcaaactgctatgtcag
tcttgtggatctgatcttggaaacgtgtctatctataagaacgcacagtttcccattctg
aagattgaagggcttctgatagaggacagcatggggagaagagatgtgaagaagaagtgg
aagaatgtaccatttggaatacaagaaataacagcaaacgacatatggcaaagatcacgt
ggagagaaacttattgacatgatatga
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