Ostrea edulis (European flat oyster): 125683109
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Entry
125683109 CDS
T09123
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oed04054
]
125683109
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125683109
Pattern recognition receptors [BR:
oed04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125683109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
RIG-I_C-RD
RIG-I_C
SWI2_SNF2
SNF2-rel_dom
AAA_19
SLFN-g3_helicase
nSTAND3
TniB
NACHT
DDR_swiveling
Motif
Other DBs
NCBI-GeneID:
125683109
NCBI-ProteinID:
XP_048779865
LinkDB
All DBs
Position
6:57875359..57891554
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AA seq
823 aa
AA seq
DB search
MQSNSKMDEEHTGQNLPVHSPMANAILLYDRNDEDVQNHFIEDQIENLSLEPDQIPSLEP
KTWKDSVHVASGTILRNASAQPSKYAYSESKAYEDKDTVEWKPFRYGVSKTESRTDVPKK
KLVLREYQHEQAEKPLRGENCIIVSPTGSGKTCVAIRIIQDHLERKRKMKKMVFVVDKNN
LANQQAEKIEEYLQCSVKVISGDIQREEECVQDMASLLPHYDVFVITAQMLVNALTKQNV
NMKFFSLLIFDECHHCCGSHPFQQVMNHYMDIKLEGDESQLPQIIGFTASLGLAKVNTLE
KATENVMTTMANMDADYLVTVQRNKSDLAKHVNNPNQFITNVPVRKKNEFGTLIKIIMTR
TEKYLELNRVGMVGIGIIRPPATRGNGQYTQWLENGLLKALATFSDSDATRSLYTIKNYL
EIYNNALVLLQHARAIDALNYIKDEIQKHPKTSNYTGIEQKIKLLLEEEYTTLEACALDH
ERTSENPLLLKLKEIILTMHAEEPNMRGIVFVRTRILAEVIASWIESTTELQHIKALKYT
GAKAQISEGGMTRYEQMDALELFREGQFKIIVATTIAEEGLDVKECNLVVRYDYAGTPIA
LVQARGRGRAENSRFYILASEDKCVAEKELINTLKEPMMEEAMKRVQQKVDHNNSTFCVQ
KRRLQELAKRDRDLAILNQSTTRIIKTGQYYLRCLKCNTFLCMSNEIRRILNCHHTCISQ
DLKQRINCTKFENAAYPGEDIEMGVGQIDCKGKGCAVKLGSIALYQGIFFPILSIKALKI
EKDMYQRDTLKKWNMVEKYFTVQDLSTDDIENIVKCGRLIEFC
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtaattctaaaatggacgaggaacacacaggacagaatttaccagtacactca
ccgatggctaacgccattcttttatatgacagaaatgacgaagacgtccaaaatcacttt
attgaagatcagatagagaatctttcactagaacctgatcaaattccttccttggaaccg
aaaacatggaaagattccgtacatgtggctagcggcacaatactacgaaatgcaagtgca
caaccaagtaaatatgcttattccgaaagcaaggcatacgaggataaagatacagtcgag
tggaaaccctttagatatggcgtatcaaagactgagagcaggacggatgttccaaagaag
aaactagtattaagagagtatcaacatgaacaagcagaaaaacctctacgaggagaaaat
tgtataattgtctctcctaccggtagtggcaaaacgtgcgtcgccatcagaataatacag
gatcatctagaaagaaaaaggaaaatgaagaaaatggtgtttgtcgtggataagaacaat
ctggcaaatcagcaggcagagaaaattgaggagtatctacagtgttcagttaaagtaata
tctggcgatatccaaagagaagaggaatgtgttcaagatatggcatcgcttctgcctcac
tatgacgtttttgtgatcacagcgcaaatgttagtcaatgctctgacgaagcagaacgtc
aacatgaaatttttctctttgcttatatttgacgaatgtcatcactgttgtggaagtcac
ccatttcaacaggttatgaatcattatatggatatcaaattggaaggagatgaaagccag
cttccacagatcattggtttcacagcctcactaggactcgcaaaagtcaatactcttgaa
aaagccactgaaaatgtgatgacaactatggcaaacatggatgccgattacttggtgaca
gtacagaggaacaaaagcgatttggctaagcatgtgaataatccgaatcaatttatcacg
aatgtacctgttcgaaagaagaatgagtttggaacactaatcaaaatcattatgactaga
actgaaaaatacttggagctcaacagggttggtatggtaggtataggaattatacgtccc
ccagcaaccagaggaaacgggcaatatacgcaatggcttgaaaacggccttttgaaagca
ttggcaacattctctgactcggatgctactcgctcactgtacaccattaagaactattta
gagatttacaataatgcccttgtcctcctacaacatgcaagagcaattgatgcactaaac
tacataaaagatgaaattcaaaagcatccaaaaacatcaaattacacagggatagagcaa
aaaataaagttattacttgaagaggaatatacaacgttagaggcatgtgcactagaccat
gaaaggacctcagaaaaccctcttctactgaagttgaaagaaatcatattaactatgcat
gcagaagaacccaatatgagaggaatagtgtttgtacgaacacgtattcttgctgaagtc
attgcttcttggattgagagtacaacggaattacagcacataaaagcactaaaatatacg
ggtgcaaaagctcaaatttcagaaggagggatgacgagatacgaacagatggacgctctg
gagctctttagagagggtcaattcaaaatcattgttgctaccacaattgcagaagaagga
ctagacgtcaaagagtgtaatcttgttgtaagatatgattatgctggaactccaattgca
ctggtacaagctagaggtcgtggtcgagcagaaaatagtcgtttctacattctggcgtcc
gaagataaatgtgttgctgaaaaagaactgataaataccttaaaagagcctatgatggag
gaagccatgaaaagggtacaacaaaaggtcgatcataacaatagtacattctgtgtccaa
aaacgacgactccaagagctggccaaaagagaccgagatctagcaatactaaatcagagc
acgacgagaataattaaaactgggcagtactatttaaggtgtttgaaatgcaacactttt
ttgtgtatgtcaaacgaaatcagaaggatattgaattgtcatcatacttgcatcagtcaa
gacttaaaacagaggatcaactgtacaaagttcgaaaacgcggcatatcctggagaagat
attgaaatgggagttggtcaaattgattgcaaagggaagggatgcgctgtgaagctgggg
tctattgctctgtatcaaggcattttctttcctattctaagcataaaggcattaaagatc
gaaaaagacatgtatcaaagagatacgttgaaaaaatggaacatggtggagaagtatttt
acggtgcaagatttgtcgacggatgatattgagaatatcgtgaaatgtggtaggcttatt
gaattctgctaa
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