Oerskovia sp. KBS0722: FFI11_017340
Help
Entry
FFI11_017340 CDS
T06124
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oek
Oerskovia sp. KBS0722
Pathway
oek03030
DNA replication
oek03410
Base excision repair
oek03420
Nucleotide excision repair
oek03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FFI11_017340 (ligA)
03410 Base excision repair
FFI11_017340 (ligA)
03420 Nucleotide excision repair
FFI11_017340 (ligA)
03430 Mismatch repair
FFI11_017340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oek03032
]
FFI11_017340 (ligA)
03400 DNA repair and recombination proteins [BR:
oek03400
]
FFI11_017340 (ligA)
Enzymes [BR:
oek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FFI11_017340 (ligA)
DNA replication proteins [BR:
oek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FFI11_017340 (ligA)
DNA repair and recombination proteins [BR:
oek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FFI11_017340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FFI11_017340 (ligA)
MMR (mismatch excision repair)
DNA ligase
FFI11_017340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FFI11_017340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QDW64034
LinkDB
All DBs
Position
complement(3871413..3873890)
Genome browser
AA seq
825 aa
AA seq
DB search
MNDATPPHPATSPDSTSTVLAAAAADTAVAPDVAPALDEAGAQRRWAELVAQVEADQRAY
YEADAPVSSDAEYDARMRELEALEAAHPALQTPESPTQRVGGRAATGFATVEHLERMLSL
DNAFSEEDLAAWAARVHRDLGVSAEAPVEYLCEVKIDGLAIALLYERGRLVRAATRGDGR
TGEDVTANVRTITSIPQQLAGDPATHPAVIEVRGEVFLGVEDFAALNEALVAAGQAPYAN
PRNTAAGSLRQKDPAVTASRNLRMYAHGVGALQWEEGEHAELGRQSDAYALFEQWGIPVS
PHNRVVDGLAGVQEMIAYFGEHRHDIEHELDGIVVKVDELALQRRLGATSRAPRWAIAYK
YPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVLVAGSTVRQATLHNQDVVRAKGVLIGDV
VVLRKAGDVIPEILGPVVALREDGVQRTEFVMPAECPECGTPLRPMKEGDVDLRCPNAES
CPAQVRGRVEHIGSRGGLDIEALGEVTAAALTQPYEPAEPPLRTEKNLFGLTVEQLAPIR
VVVRDPETGLPRPFEGVGESGEVEMSDGSVLLAKVVRPFQKVAARTYPPGFEDATPAERR
AAGVRKDFPVYGPSTTAQTLVDELRIARTKDLWRILVSLNIRHVGPVAARALAEWFGSLD
AIRAASREELAAVEGVGPVIADEVLAWFEVDWHREIVETWKQDGVRFDTPGHPGPGARQQ
PTGPLAGLTVVVTGGLEGFSRDGAKEAILTAGGKASGSVSKKTDYVVVGENAGSKETKAR
DLGLRILDEAGFVALLAGGPAAVGDAQEPEDSEPEDSDAEVPAPR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacgccaccccgccgcaccccgcaaccagccccgacagcacgagcacggtcctc
gcggccgcggccgccgacaccgctgtagcccccgacgtcgccccggcactggacgaggcc
ggtgcacagcggcgctgggccgagctcgtcgcccaggtcgaggccgaccagcgggcctac
tacgaggccgacgcccccgtgtcgtcggacgccgagtacgacgcgcgcatgcgcgagctc
gaggcgctcgaggcggcgcacccggccctccagacccccgagtcgcccacgcagcgcgtc
ggcgggcgtgccgcgacgggcttcgcgaccgtcgagcacctcgagcgcatgctctcgctc
gacaacgcgttctccgaggaggacctcgccgcgtgggccgctcgcgtgcaccgggatctg
ggcgtctcggccgaggccccggtggagtacctgtgcgaggtcaagatcgacggcctcgcg
atcgcgctgctgtacgagcgggggcgcctcgtccgggcggcgacccgtggcgacgggcgc
acgggcgaggacgtcacggccaacgtccgcaccatcacgagcatcccgcagcagctcgcg
ggcgacccggccacgcaccctgcggtgatcgaggtccggggcgaggtcttcctgggggtc
gaggacttcgcggccctcaacgaggcgctcgtcgcggccgggcaggcgccctacgccaac
ccgcggaacaccgcggccggctcgctgcgccagaaggacccggccgtgaccgcgagccgc
aacctgcgcatgtacgcgcacggcgtcggggcgctccagtgggaggaaggggagcacgcc
gagctcggtcgccagtccgacgcgtacgcgctgttcgagcagtggggcatccccgtctcg
ccgcacaaccgggtcgtcgacggcctcgcgggcgtgcaggagatgatcgcgtacttcggc
gagcaccggcacgacatcgagcacgagctcgacgggatcgtcgtcaaggtcgacgagctc
gcgctccagcgccgcctcggggcgacgagccgcgcgccgcgctgggccatcgcctacaag
tacccgcccgaggaggtcaacacccgtctgctcgcgatccaggtcggggtcgggcggacc
ggccgggcaaccccgtacgccgtcatggagcccgtgctcgtcgcgggcagcaccgtgcgg
caggcgacgctgcacaaccaggacgtcgtgcgcgccaagggcgtgctgatcggcgacgtc
gtggtgctgcgcaaggccggggacgtcatcccggagatcctcgggccggtcgtggcgctg
cgcgaggacggcgtgcagcgtacggagttcgtcatgccggccgagtgccccgagtgcggg
acgccgctgcgccccatgaaggagggcgacgtcgacctacgctgccccaacgccgagagc
tgcccggcgcaggtccgcgggcgggtcgagcacatcggctcgcgcggcggcctcgacatc
gaggcgctgggcgaggtcaccgcggccgcgctcacgcagccctacgagcccgccgagccg
ccgttgcgcaccgagaagaacctgttcgggctcacggtcgagcagctcgccccgatccgc
gtcgtcgttcgcgacccggagaccgggctgccccggccgttcgaaggggtgggggagtcg
ggcgaggtggagatgtccgacggctcggtgctgctggccaaggtcgtccggccgttccag
aaggtcgccgcccgcacctacccgccggggttcgaggacgcgactcccgccgagcgccgg
gctgcgggcgtccgcaaggacttcccggtgtacggcccgtcgacgaccgcgcagacactc
gtggacgagctccggatcgcgcggaccaaggacctgtggcgcatcctcgtgagcctcaac
atccggcacgtcgggccggtcgccgcccgggccctcgccgagtggttcgggtcgctcgac
gcgattcgggccgcgagccgggaggagctcgcggcggtcgagggcgtcgggccggtcatc
gccgacgaggtgctcgcctggttcgaggtggactggcaccgcgagatcgtcgagacgtgg
aagcaggacggcgtccggttcgacaccccgggtcaccccggccccggtgcacgccagcag
ccgacgggcccgctcgcgggtctgaccgtcgtggtcacgggaggcctcgaagggttctcg
cgcgacggcgccaaggaggcgatcctcaccgcgggcggcaaggcctcggggtcggtgtcc
aagaagaccgactacgtggtcgtgggggagaacgcgggctccaaggagaccaaggcacgg
gacctgggcctgcgcatcctcgacgaggccgggttcgtggcgctcctcgcgggcggaccg
gcggcggtcggggacgcgcaggagcccgaggactcggagccggaggactcggacgccgag
gtgcccgcgccgagatag
DBGET
integrated database retrieval system
