Osmerus eperlanus (European smelt): 134007474
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Entry
134007474 CDS
T10927
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
134007474 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oep03400
]
134007474 (lig4)
Enzymes [BR:
oep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134007474 (lig4)
DNA repair and recombination proteins [BR:
oep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
134007474 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
Mating_N
Motif
Other DBs
NCBI-GeneID:
134007474
NCBI-ProteinID:
XP_062302935
LinkDB
All DBs
Position
21:8752988..8756685
Genome browser
AA seq
905 aa
AA seq
DB search
MEGTSKKESSVAAQVPFLHLCNTLEKIQKSKLRPDKAKFLKDFLDSWRKFHAALHKDDPQ
TTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAPSTSQ
AEAGDFAGMAYFVLKRRCTSQGSLSIKEVNDFLDSVAMNNAGKNKDLVKKSLLHLITQST
ALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVTTDLDKVCRQLHDPSVALVDVS
IGLFSAFKPMLAAVGHMRQVEKQMGSNPFFIETKLDGERIQLHKDGDVYKYFTRNAFEYT
QQFGASPLEGSLTPYIHNVFKSHVVSCILDGEMMAYNATTEAFMQKGSKFDIKRLMEDSE
LQTCFCVFDVLLVNNQKLGKETLTKRDDALQTIFTPVKGRIQLVRKTKVTSMQDVANGLN
EAIDNREEGIMLKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGRRGGM
MSHFLCAVAEAPGLGEKPSVFQTLCRIGSGYTMKELYELGLKLAKHWKVYRKNDPPASIL
CGTERPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMTLAEL
DQFRGKASGKLASRHLRLSADEPQRKKRKPAAKPKKTIGVIDHFKSTDLSDVTKETDMFE
DVEFCVMSGSAEHPKAELEKGVARCGGVVVQNPGQDTYCVIAAVENMRVKNLISADRHDV
VWAAWLLECLDGKRVVPWQPRHMIHMSPSTKEHFAKEYDRYGDNYFVDTSEAQLREVFGR
ISSADTSATCSGLVEQRYGWDDLPTSMFRPFRAYVDSYAQVGDPKTAIPATGLDMRALEF
RFHGGTVVQKLEEGVSHAIVAGETRVPELRRRRRLFAKKFKMVKESWVTDSIQAGHLQND
NDYLV
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaacttccaaaaaggaaagctctgttgctgcccaagttccctttctccacctg
tgcaacacacttgagaagatccagaagtccaaacttcgaccagacaaagccaaatttctc
aaggacttcttagactcgtggcgaaagttccacgctgccctccacaaagacgacccccag
accacagactccttctacccagcgatgcgcctcatcgtccctccttttgagagagagaga
atggcctatggcattaaagagagcatgttggctaagctttacatcgatgtgttgggcctg
ccgaagaatggacccgaggcgaacaaactgttgaactaccgtgcccccagcacgtctcag
gcagaggcgggagacttcgcagggatggcctactttgtgttgaagagacggtgcacgagc
cagggcagcctcagcatcaaagaggtcaacgacttcctggactcggtggccatgaacaac
gcgggcaagaacaaggacttggtgaagaagagcctgctgcacctcatcacccagagcaca
gccctggagcagaagtggctgatccgaatgatcctcaaggacatgaagctgggcgtcagc
aaggagacggtgctccaggtgttccacccggacgccgccgaactctacaacgtcaccacc
gacctggacaaggtgtgccgtcagctccacgacccctccgtggctctcgtcgacgtctcc
atcggcctcttctcggcctttaagcccatgctggcggctgtgggtcacatgcgccaggtg
gagaagcaaatgggaagcaatcccttcttcatcgaaaccaagctggacggagaacggatc
cagctgcacaaggacggggacgtctacaagtacttcaccaggaacgctttcgagtacacg
caacagttcggggcttcgcctctagagggctccctgactccttacattcacaacgtcttc
aagtctcacgtggtctcgtgcattctggacggcgagatgatggcctacaacgccacgacg
gaggccttcatgcagaaagggagcaagttcgacatcaagaggctcatggaggattcggag
ttgcagacgtgcttctgtgtcttcgacgtcctgctcgtgaacaaccagaagctgggcaag
gagacgcttacgaagcgtgacgacgccctgcagaccatcttcacgcccgtcaagggcaga
atacagctggtgcgcaaaacaaaagtcaccagcatgcaggatgtggcgaacggcctcaat
gaagccatcgacaacagggaggaggggatcatgttgaaggatcccatgtccatctataag
cctgataaaagaggtgaaggctggctcaagatcaagcccgagtacgtggacggcttgatg
gatgaactcgacctgctgatagtcggtggctactggggcaaaggaaggaggggtggaatg
atgtctcatttcctgtgcgcagtggctgaggccccaggcctcggagagaaaccctccgtc
ttccaaacgctgtgtcgcatcggctccggctacaccatgaaggagctgtacgagctgggc
ttgaagctggccaagcactggaaggtctaccggaagaacgaccctcccgcgtccatcctg
tgcggcacggagaggcccgaggtctacatcgaaccctgcaactcggtcatcatccaggtc
aaggcggccgaaatagtcggcagcgacatgtacaagaccaactgcacgctccgtttcccc
cggatagagaagatcagggaggacaaggagtggcaccagtgcatgaccctggccgagctg
gaccagttccgcggcaaggcgtccgggaagctagcctcgcgccacctccgcctcagcgcc
gacgagccccaaaggaagaagcgtaagccggcggccaagcccaagaagaccatcggcgtc
atcgaccacttcaagtccacggacctctcggacgtgaccaaggagacggacatgttcgag
gacgtggagttctgcgtcatgagcggcagcgcggagcaccccaaagcggagctggagaaa
ggcgtggccaggtgcgggggcgtcgtggtgcagaaccccggccaggacacctactgtgtg
atcgcggccgtggagaacatgcgggtgaagaacctgatctccgccgaccggcacgacgtc
gtctgggccgcgtggctgctcgagtgcctggacgggaagcgcgtggtgccatggcaaccc
cgccacatgatccacatgtccccctccacgaaggagcactttgccaaggagtacgaccgc
tacggagacaactattttgtcgacaccagcgaggcgcagctcagggaggtgtttgggagg
atcagtagcgcggacacgagcgccacctgctcagggctggtggagcagcgatacggctgg
gacgacctgcccaccagcatgttcagacccttcagggcctacgtggacagctacgcccaa
gtgggagaccccaagacggccataccggcgacgggtttggacatgcgcgctctggagttc
cgcttccatggggggacggtggtccagaagcttgaggagggggtgtcccacgcgatcgtg
gcaggggaaaccagggtgccggagttgagaaggcggagaaggctcttcgccaagaagttc
aagatggtgaaggaatcgtgggttacggactctatccaagctggacatttgcagaatgac
aatgactacctggtgtga
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