Osmerus eperlanus (European smelt): 134013617
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Entry
134013617 CDS
T10927
Symbol
rapgef6
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
134013617 (rapgef6)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
PDZ_6
cNMP_binding
RA_2
PDZ_2
Vit_b-sht_shell
Motif
Other DBs
NCBI-GeneID:
134013617
NCBI-ProteinID:
XP_062309147
LinkDB
All DBs
Position
27:complement(7383512..7498077)
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AA seq
1666 aa
AA seq
DB search
MIMTGSMENSFKQALKKPPALRTTEDLHIIYGHLYHMDVLSHLREHQLRLMCTSARYERH
EANRVLFYPDSISTCWYILLTGSVFVKEHMYLARCCFGKQLGGRRGCECITLEPSEMIVV
ENGGEGDDGALQRETSKRRSRRHFRKVNSRGERELITDGQDLGCHTLPADLNKMHLTDHM
HQQLTHVPPSQSGCSIASDSGSSSLSDIYQATESELGDVDLSGLPEAAVDSEEEEEEDED
IEQASAALLGRDLVRECLEKDPADRTDDDIEQLLEFMHQLPAFANMTMSVRSELCSVMVF
EVVEHAHTLILHNKQELDLWYVILNGAVEISHEDGRMETLCMGNSFGISPSLDKQYMSGA
VCSKGDDCQFVCIAQDDYWRILNHVEKNTHKEEEEGEIVMVKEHRELDRSGTRKGHIVIK
GTPERLIMHLVEEPSVVDPTYIEDFLLTYRTFLSSPMEVGKKLLEWFKVDSLRDTVTRIV
LLWVNNHFNDFEGDPAMTRFLEDFEKLLEATKMKGHLRLLNIACAAKAKWRQVTLQKPSR
ESPLLFSLQGGSERGFGIFVEAVEEDSKAAEAGLKRGDQIMEINGQNFENISYTKAVDIL
KNNTHLSLTVKTNIFVFKELLSRLVQEKKNGGPHIPKIQERKGNRFSIPDLPGDMEFPTD
HKATKKMKANTVSGGRNKIRKMLEKTRFSILPPKPFSEGGVCQSQDDSVVGTKQCRHSVA
IMPIPGSLSSSSPDLLQPATSVLDFSNPADTPDQVIRVFKADQQSCYIIISKDTTAKDVV
SHVVNEFGLLAAPETFSLCEVSVSPEGVIKQRRLPDQLSKLADRIQLNGRYYLKNNMETE
TLCSDEDAQELLRESQISLLQLSTVEVAAQLAMRDFDLFRNIESTEYIDDLYKLSPSTAS
GRLKQFEEVINQETFWVATEILKESNTLKRMKIIKLFVKIALHCRECKNFNSMFAIISGL
NLAPVARLRVSWEKLPSKYEKLFRDLQDLFDPSRNMAKYRNVLSNQNMQPPIIPLFPVVK
KDLTFLHEGNDSHVDGLVNFEKLRMIAKEIRHVVRMTSANMDPALMFRQRKKRWKSLGSL
SQGSTNSNMLDVQGGAHKKRVRRSSLLNAKKLYEDAQMARKVKQYLCHLQVETDEEKHLA
MSMQCEPSYSTLSKNLSERRSTKSDMSPVSLRSTLPSSRAQNRVSQVLQSPVTLNPLRKK
STAKELAITLNSSSPQVVKKPPMGNSLAPAGEREREPGDWTRGRAPEDSMSVVSSLHSSP
TISPQGSPRKVGGVPKSQNSQMNLSGSSSSLASNTSTKGGTANLRSYGIGYTLLPAGRTE
LSDSSHSEISSRSSLVSNCSVDSMPNTAQDDRCLSKTSEQAEISIPATSQPSMSSSPCTR
GPVMRTSTFTSSPSAEELTPDHTSLDSVADSGRGSWTSCSSNSHDNFQNLPSGQSRPWDH
SHLIGFRHTQLAGPIAELEGIATPSWAVPTVMVAGADDPTANRHSSDSSDHNQSRQSWAS
SSSLSDTYEGSYGTIKRRAAETSAPQGEGPERIASTDAAYKMVTSSTEKGLIVYCVTSPS
KDERYRAPPPTPPGYQGLTLGDVGVALGGMADAPPLPRPTHLRPPGYSEALQRSKLLQSP
GGMGGLGDPRRMAPHHQGQGSSWPPSACLPPQGPADSEEDEQVSAV
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgatcatgactggatccatggagaactccttcaaacaagctttgaagaaaccgccagca
ctaaggacaacggaggatctccacatcatctatggacacctttaccacatggatgttctg
tctcacctccgagagcaccaactcaggttgatgtgcacctccgccaggtacgagaggcat
gaagctaaccgtgtcctcttctaccctgacagtatctcaacctgctggtacatcctactg
accggttcagtgtttgtgaaggagcacatgtacctggcccgatgctgctttgggaagcag
cttggaggcagaagaggctgtgaatgcatcactttagagccatcagaaatgattgtggtg
gaaaacggtggagagggggatgacggcgccctgcagagagaaacgtccaagagacggtcc
cggcgccacttccgcaaggtcaactcccggggagaacgggagctcatcacggatggccag
gacctgggctgccatacgcttcctgcagacctcaacaagatgcacctcacagaccacatg
caccagcagttgacacatgtgcctcccagccaatcgggatgcagcatcgccagcgactct
gggagcagcagcctatcagacatctaccaggccacagagagtgagctgggggacgtggac
ctgtctggcctgccagaggcggcggtggactctgaggaagaggaggaggaggatgaagat
attgagcaggcgtctgctgccctcctagggagagacctggtcagagagtgtctggagaag
gaccctgcagatcgcaccgatgacgacatagagcaactgctggagttcatgcaccagctg
cctgcatttgccaacatgaccatgtctgtgcgaagtgagctgtgcagcgtcatggtgttt
gaggtggtggaacacgcccacactctcatcctccacaacaaacaagagctggacctgtgg
tatgtgatcctgaacggggcggtggagatcagccatgaggacggcaggatggagaccctc
tgtatgggcaacagttttggtatctctccctccctggacaaacagtacatgagtggagca
gtctgcagcaagggagacgactgccagtttgtgtgcattgcccaggatgactactggcgg
atcctcaaccatgtggagaagaacacgcacaaggaagaggaggagggtgagatcgtcatg
gtgaaggagcaccgtgagctggaccgcagtgggaccaggaagggacacattgtcatcaag
ggcaccccagagaggctgatcatgcacctggtggaggagccatcggtggtggaccccacc
tacattgaggacttcctgttgacctaccgcaccttcctgtccagccccatggaggtgggc
aagaagctgctggagtggttcaaggtggacagcctccgagacacggtgaccaggatagtg
ctgttgtgggtgaacaaccacttcaacgactttgagggcgatccggccatgactcgtttc
ctagaagacttcgagaagcttctggaagcaacaaagatgaagggccacctgcgtctgcta
aacattgcgtgcgcggccaaggccaagtggaggcaggtgacgctgcagaagccctccagg
gagtcaccgctgctcttcagcctgcagggcggcagtgagaggggcttcggcatcttcgtg
gaggccgtggaggaggacagcaaggctgccgaagccggcctcaaacggggggaccagatc
atggagattaacggccagaactttgagaacatctcctacaccaaagctgtggacatcctg
aagaacaacacacacctgtccctcactgtcaagaccaacatctttgtcttcaaggagctt
ctcagcaggcttgttcaggagaagaagaatggaggtccacacatccccaagattcaggag
aggaaggggaaccgtttctccatccctgatctccccggcgacatggagttccccaccgac
cacaaggctaccaagaagatgaaggccaacaccgtgtctgggggcaggaacaagatcagg
aagatgcttgagaagactcgcttcagtatactgccccccaagcccttcagtgagggggga
gtgtgccagtcccaggatgacagtgtggtgggaaccaagcagtgtcgtcacagcgtggcc
attatgcccatccctggcagcctgtcatccagcagtccagacctcctgcaacctgccacc
agcgtgctagacttctctaaccctgctgacacgcccgaccaggtgattcgtgtgttcaag
gcggaccagcagagctgttacatcatcatcagcaaggacaccacagccaaggacgtggtc
agccacgtggtcaacgagtttggcctgctggcggcgcctgagacgttctcgctgtgtgag
gtcagcgtcagcccagagggcgtcatcaaacagagacgtctacccgaccagctgtctaaa
ctagctgaccgcattcagctgaacggcaggtactacctaaagaacaacatggagacagag
acgctatgctcagacgaggatgcccaggagctcctgagagagagccagatctcactgctg
cagctcagcaccgtggaggtggccgcccagctcgccatgagggactttgacctctttcga
aacatcgagtccaccgaatacatagacgacctctataagctgagcccgtccactgccagc
ggacggctcaagcaatttgaggaggtgatcaaccaggagactttctgggttgccacggaa
atcctgaaggagagcaacactctgaagaggatgaagattatcaaactcttcgtcaagatc
gccctgcactgcagagagtgcaagaacttcaactccatgtttgccataatcagtggttta
aacctggccccggtggctcggttgcgtgtctcgtgggagaagctgcctagtaagtacgag
aagctgtttcgggatctgcaggatctatttgacccatccaggaatatggccaagtaccgc
aacgtccttagcaaccagaatatgcagccaccaatcatacccctcttccccgtcgtcaag
aaggacctcaccttcctccacgaaggtaatgattcccatgtggacggcttggtgaacttt
gagaagctgaggatgatcgccaaggagatccgccatgttgtcagaatgacctccgccaac
atggaccccgcccttatgttccgtcagaggaagaagaggtggaagagtctagggtctctg
agtcagggaagcaccaactccaacatgctggatgtccaggggggcgcacacaagaaacgt
gtccgccgcagctcactgctcaatgccaagaagctgtatgaagacgcccagatggcgcgc
aaggtcaagcagtacctgtgtcacctgcaggtagagacggatgaggagaaacacctcgcc
atgtctatgcagtgtgagccctcctatagtactttgtctaagaacctgagtgagcggcgt
tccaccaagtcggacatgtctccagtgtcacttcgctcgacactgccatcaagccgggcc
cagaaccgggtctcccaggttctccagagcccggtgacactcaacccgctccgcaagaag
agcacagccaaggagttggccatcacgctgaattccagctcccctcaggtagtgaagaag
ccccccatgggtaacagcttagccccagcaggggagagggagagagagcctggagactgg
accagaggaagagcacctgaagacagcatgtctgtagtctcctctcttcactccagtccc
accatctctcctcagggttccccgcgcaaggtgggcggcgtgcccaagtcccagaactcc
caaatgaacctgtctggctcgtcctcgtctctggccagcaacaccagcaccaagggtggc
actgccaacctacgcagctatggcataggctatactctactgccagcaggcagaacagaa
ctgtcagactccagtcacagtgagatttcgtctcgctccagccttgtcagtaactgctct
gtcgactcgatgcccaacaccgctcaagacgatcgctgtctcagcaagactagcgagcaa
gcagaaatctcaatcccagccacaagccagcccagcatgagttcatctccatgtacccga
ggtcctgtaatgcgcacctccaccttcacctcctcccccagtgcggaggagctgactcca
gaccacacctccttggactccgtggctgacagtgggcggggaagctggacctcatgctcc
agcaactcccacgacaacttccagaaccttccgtccggccagtcacggccctgggaccat
tcccacttgataggcttcagacacacccagctggctggaccaatcgcggagctggagggg
attgcaacaccgtcatgggcggtgccgacggtgatggttgccggggcagatgaccccaca
gcaaatagacactccagtgatagctctgaccataaccaatcacggcagagctgggcgtct
tccagctcgctgtcggacacgtacgaaggaagctacggaacgattaaacgacgagcggct
gagacctctgcacctcagggggaggggcctgaaaggatagcaagcacagatgcagcctat
aaaatggtgacatcgagcacagagaagggcttgatagtgtactgtgtcacctccccgagc
aaggacgagcggtaccgggccccccccccaacccctccggggtaccaagggctgaccctg
ggggatgtgggggtggcccttggaggaatggcggatgccccccccctgccccggcccact
cacctcagacccccaggctatagcgaggcactgcagaggagcaaactgttgcagagcccc
ggggggatgggagggctaggggaccctcgcaggatggccccccaccaccagggccaaggg
tcctcctggcctcccagtgcctgcctgcccccacaaggcccagctgatagtgaggaggat
gaacaggtctctgcagtgtaa
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