Osmerus eperlanus (European smelt): 134015311
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Entry
134015311 CDS
T10927
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134015311 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134015311 (kdm2ba)
04121 Ubiquitin system [BR:
oep04121
]
134015311 (kdm2ba)
03036 Chromosome and associated proteins [BR:
oep03036
]
134015311 (kdm2ba)
Enzymes [BR:
oep01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
134015311 (kdm2ba)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
134015311 (kdm2ba)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134015311 (kdm2ba)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134015311 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
134015311 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_4
PHD
LRR_At1g61320_AtMIF1
Viral_cys_rich
Motif
Other DBs
NCBI-GeneID:
134015311
NCBI-ProteinID:
XP_062310733
LinkDB
All DBs
Position
28:3535818..3545269
Genome browser
AA seq
784 aa
AA seq
DB search
MRITIQNLNRSENAGFDCLPNAAYKLQQRAANRPKPKMGTPAAVKLPSNRSSSGARRRRT
RCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKE
DTQEEEEDKFNVMLMECSICNEIVHPNCLKVKDTSGVVNEELPNCWECPKCNYAGKTGKV
CKQKRGPGFKYASNLPGSLLREQKAAKEEADAGGSVRRREETPRHRLDEPVGRQPPLLSP
SCLPRPRPEDKLRKKRKLFDDDEEEDLGVRKKGKSADPLFPKLLHQIKTEEEDQEEEEEE
EEEDEEEREPFYRRVLERDEADDEEDSKADLPSPHLKTPFLDSDQSHCSSPRAGPSSEGG
SETQEKGPRPKARRKRRIPNKELSKELSKALNQEIQKTEESLANENRQPLKEEPESENEE
PKRPFRNGGGGDLGGERPHLRTREMNGTPWELRHFYPSQITPLGFNRSSPATRPLPPRSP
PKCVQMERHVIRPPPISPPPDRLPLTDGKTHAMQREVWMKIFGYLPHKELCVNMRVCKTW
NRWCCDKRLWTRIDLNRCKAISPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLR
VLLLSGCSWVAVSALCTSSCPPLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRCKL
RNIVDLRLAGLDITDASLRLIIRQMPSLSSLDLSYCNHINDQSVNLLTAAGTTTRDSLTV
VNLSVCNRVTDHSLTFFKRCGSICQIDLRYCKQVTKTACERFIAEMSVSVQFGLKEDKLL
QKLS
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaggattacgattcagaatctgaacaggtcagagaacgctggatttgactgtttgcct
aatgctgcctacaagctacaacaacgggcagccaatcggccaaagcccaagatggggacg
ccagctgccgtcaagctgccgtccaatcgcagctcgtctggtgcgaggcgccggcggaca
cgctgtcggaagtgtgaggcatgcctgcggaccgagtgtggcgagtgtcacttctgcaaa
gacatgaagaagtttggaggtccgggtcgcatgaagcagtcatgtatcatgaggcagtgc
atcgcgccggttcttccccacacggccgtgtgtgtggtgtgtggtgaggcaggcaaggag
gacacgcaggaggaggaagaggacaagttcaatgtcatgctcatggagtgctccatctgc
aatgagatagttcatcccaactgtctcaaggttaaagatacttcgggcgtggtgaacgaa
gagctccctaactgttgggagtgtcccaaatgcaattatgctgggaaaactggaaaagtc
tgcaagcaaaaaagaggtccagggttcaagtacgcctccaacctcccaggctccctgctg
agggagcagaaggccgccaaggaggaggcggacgcggggggctcggtccggaggagggag
gagacccccaggcaccggctggacgagcccgtcggccgacagccgcctctcctgtcgccc
agctgcttgcctcggccccgaccggaggacaaactgaggaagaagaggaagctgttcgac
gacgatgaggaagaggacctcggcgtgaggaagaagggcaagtcagctgatcctctcttc
cccaaacttctccatcaaatcaagacggaggaagaggaccaagaggaggaggaggaggaa
gaggaggaggatgaggaggagcgggaacctttctaccggcgtgtccttgaaagggacgaa
gctgacgatgaagaggacagcaaggccgacctgccgagtccccacctcaagacgcctttt
ctggacagcgaccagtcgcactgcagctccccccgggcggggcccagcagcgagggaggc
agcgagacccaggagaagggcccgcggcccaaagcccgccgcaagcgccgcatccccaac
aaggagctgagcaaggagctgagcaaagccctcaaccaggagatccagaagaccgaggag
tccctggccaatgagaaccgccagcccctcaaggaggagcccgagagcgagaacgaggag
cccaagaggcccttccggaacggcggcggcggcgacctgggaggtgagcggccccacctc
aggaccagggagatgaacggcaccccctgggagctgcgccacttctaccccagtcagatc
acccctctgggcttcaacaggagctcccccgccacccggcccctgcccccgcgctccccg
cccaagtgtgtccaaatggagagacacgtcatccgcccgccccccatcagcccccctccg
gacaggctgcccctcacggacggcaagacccacgccatgcagagggaggtctggatgaag
atcttcgggtacctccctcacaaggagctgtgtgtcaacatgcgggtctgcaagacctgg
aacagatggtgctgtgacaaaaggctgtggacccggattgacctgaatcgctgcaaggcc
atctcaccgctcatgctcagtgggatcatccgcagacagcccgtctccctggatctcagc
tggaccaacatctccaagaagcaactcagctggctcatcaaccgattaccaggtctgagg
gtgctgctgttgtcgggctgctcctgggtggccgtgtcagccctgtgtacctccagctgc
cctccgctccgcaccctggacgtccagtgggtggaggggctcaaagacgcccagatgaga
gacctgctgtcccccccgacagacaacagaccaggtcagatggacaaccgctgtaagctg
aggaacatagtggacctgcgcctggccggcctggacatcaccgacgcgtctctgcgtctc
atcatccgacagatgccttccctgtccagcctggacctcagctactgcaaccacatcaac
gaccagtcggtcaacctgctgacggcggcaggtaccaccaccagagactccctcacggtc
gtcaacctgtcagtgtgtaacagggtgacagaccactccctcacctttttcaagcgctgt
ggaagcatctgtcaaattgacctccgctactgcaaacaggtgaccaagacagcctgcgaa
cgtttcatagcggagatgtctgtgagtgtgcagttcggactgaaggaagataaattgctg
cagaagctcagctag
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