Osmerus eperlanus (European smelt): 134024506 Help Entry 134024506         CDS       T10927                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism oep  Osmerus eperlanus (European smelt) Pathway oep04115   p53 signaling pathway oep04145   Phagosome oep04148   Efferocytosis oep04350   TGF-beta signaling pathway oep04510   Focal adhesion oep04512   ECM-receptor interaction oep04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oep00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     134024506 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     134024506 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     134024506 (thbs1b)    04148 Efferocytosis     134024506 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     134024506 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     134024506 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     134024506 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:oep04131]     134024506 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oep00536]     134024506 (thbs1b) Membrane trafficking [BR:oep04131]  Endocytosis   Phagocytosis    Opsonins     134024506 (thbs1b) Glycosaminoglycan binding proteins [BR:oep00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    134024506 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS Laminin_G_3 EGF TSP1_CCN cEGF Laminin_G_2 Laminin_G_1 Motif Other DBs NCBI-GeneID:  134024506 NCBI-ProteinID:  XP_062322951 LinkDB All DBs Position 8:complement(4861896..4876109) Genome browser AA seq 1171 aa AA seqDB search MKLTGIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPKKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPENSFRDLIDSIHEERGFLLLLNFKQFKRTRGSLLTVEKLDGSGPVFEIIS NGKANTLDVVFSTENKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA PVQSILTHEISTSARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSIMTDTI TLDNPINGSSPAIRTDYTGHKTKDLQMICGFSCEDLASMFKELRGLGVVVKELSNELRKV TDENKLLMNRVGIHSGVCLHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCAN ATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ TRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGQDCQGEGR QTEKCQKSPCPINGNWGPWSPWDTCSVTCGGGAQTRKRLCNNPVPKYGGKECMGEAKDSQ LCNKNSCPIDGCLSNPCFAGAKCTSFPDGTWKCGKCPTGYSGNGIKCKDIDECKEVPDAC FEFNGVHRCENTDPGYNCLPCPTRFSGPQPFGKGVEEAAAKKQVCAPRNPCLDGSHDCNK NARCNYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNSDLVCVENATYHCKKDNCP NLPNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFIYNPRQFDYDRDDVGDRCDNCPY NSNPDQTDTDSNGEGDACSLDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLE HNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDVCDHDDD NDGIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRK FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERD DDYAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKMVNSTTGPGEHLRNA LWHTGNTPGQVKTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSIY DKTYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacaggaatatttttactcttgatgctctggaactgcgagagcgcacgagtt gcagagagtcgggacgacaacagtgtgtacgacctgtttgaactggtccaagtccccaag aaaaaccacggggtcaccctcgtgaagggcgacgatccatacagccccgcctacaagatc ctcaacccagacctgatccccccggtacccgagaactccttcagggacctcatcgattcc atccacgaggagagggggttcctcttgctgctgaacttcaagcagttcaagaggacaaga ggaagcctccttaccgtggagaagctggacggttccggccccgttttcgagattatttcc aacgggaaggctaacaccttggatgtggttttctccaccgagaacaagcagcaggtggtt tccattgaggacgtggacttggcgacggggcactggaagaacatcactctgttcgtgcaa gaggaccgcgcgcagctctacgttgggtgcgaggaggtcaacaccgccgagctggacgct ccggtccagagcatcctcactcatgagatatcaaccagcgcgcgcctccgcattggcaag ggagcagtgaaagaccgatttatgggagtgcttcaaaacgtacgctttgtgtttggaacg acccttgatgccattctgcgcaacaaaggatgccaaaactcaatcatgactgataccatc actctggacaaccccatcaatggatccagccccgctattagaaccgattacacaggccac aaaaccaaagacctgcagatgatctgtggtttctcctgtgaggacctggccagcatgttc aaggagctgaggggcctgggggtggtggtgaaggagctctctaacgaactgcgcaaagtg acggatgagaacaagctgctgatgaaccgcgtcggcatccacagtggcgtctgtctgcac aatggcatcgtccacaagaacaaggatgagtggaccgtcgatgactgcacggagtgcact tgtcagaactccgccacggtgtgccgcaagatctcctgccctctgatcccctgtgccaac gccaccgtgcccgatggggagtgctgccctcgctgtggaacaccgagtgactacgcggag gacggctggtccccctggtctgaatggacccactgttctgtgtcgtgtgggcggggcatc cagcagcgaggtcgctcctgcgaccgcatcaacaacaactgcgagggcacgtcggtgcag acccgcgactgctacctccaggagtgcgacaaacgcttcaagcaggacggcagctggagc cactggtcgccctggtcctcctgctcggtgacctgcggcgcgggcgtcatcacccggatc cgcctttgcaactcccccacgccccagctgggtggccaggactgccagggcgagggacgc cagaccgagaagtgccagaagtctccgtgccccatcaatggcaactggggaccctggtca ccgtgggatacctgctctgtcacctgcgggggaggggcccaaactcgtaagcgtctgtgt aacaaccctgtgcccaaatatggtggaaaggagtgtatgggtgaagccaaagactcacag ctatgcaacaagaacagttgtcccatcgacggatgcctgtctaatccctgctttgccgga gccaagtgcaccagcttccctgatgggacctggaaatgtgggaagtgcccaactgggtac tcaggaaacggcatcaaatgcaaggacatcgacgagtgcaaagaagtgcctgacgcttgc tttgagttcaacggtgtgcacaggtgtgagaatacagaccctggctacaactgtctgccc tgcccaacccgcttctccggtcctcagcccttcggcaaaggcgtggaggaggcagccgcc aagaagcaggtgtgcgcgccacgtaacccctgtctggacgggagccacgactgcaacaag aacgcccgctgcaactacctgggccacttcgctgaccccatgttccgctgcgagtgcaag cctggctacgccgggaacgggcacatctgtggggaggacacggacctggacggctggccc aactcagacctggtctgtgtggagaacgccacctaccactgcaaaaaggacaactgtccc aaccttcccaactctggccaggaagactacgacaaggatggcattggtgacgcttgtgac aacgacgatgacaatgatggtatccctgacgacagggacaactgcccgttcatctacaac cccaggcagtttgattacgaccgtgacgatgttggtgaccgctgcgataactgcccgtac aacagcaacccagaccagacagacactgacagcaatggagaaggagacgcctgctcgctg gacatcgatggagacggaattctgaacgagaaggacaactgcccctatgtgtataacgtc gaccagagggacacagacctggatggcgtgggtgacatgtgtgacaactgccctctggag cataatcctgaccaggtggactctgatgacgatcgcgtgggagacaagtgcgacagcaac caggacatcgacgaggatggccaccagaacaacctggacaactgcccctacatccccaac gccaaccaggccgaccacgacaaggacgggaaaggagacgtctgcgaccatgacgacgac aacgacggtatccctgacgacaaagacaactgcagactggcctttaaccctgaccagctg gactctgatggtgatggtcgcggcgatgcctgcaaggatgacttcgaccaagacaacgtg cctgacatctacgacgtttgtcctgagaactttgacatcagcgagacagacttcagaaag ttccagatggttcctttggaccccaaaggcacctcacagatcgaccccaactgggtggtc cgccaccagggcaaagaactggtgcagacagtcaactgcgaccctggcattgctgttggt tttgatgagttcaactctgtggacttcagcgggacgttcttcattaacacggagagggac gatgactatgccggcttcgtgtttggataccagtcaagctccaggttctacgtggtaatg tggaagcagatcacccagacctactggtccaacaagcccaccaaggcccagggttactca ggcctgtccatcaagatggttaactccaccacaggaccgggagagcacctgaggaacgcc ctgtggcacacagggaacacacctggacaggtgaaaactctgtggcacgacccaaagaac attggatggaaagactttactgcctacagatggcatctaatccacagaccaagaacagga cacatcagagtggtgatgtatgagggcaagaagatcatggctgactctggaagtatctac gataagacgtatgctggtggacggctaggtctttttgtcttctctcaggagatggtatac ttctcagacctcaagtatgaatgcagagatgcataa

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