Osmerus eperlanus (European smelt): 134031019
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Entry
134031019 CDS
T10927
Symbol
irf3
Name
(RefSeq) interferon regulatory factor 3
KO
K05411
interferon regulatory factor 3
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04620
Toll-like receptor signaling pathway
oep04621
NOD-like receptor signaling pathway
oep04622
RIG-I-like receptor signaling pathway
oep04623
Cytosolic DNA-sensing pathway
oep05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
134031019 (irf3)
04621 NOD-like receptor signaling pathway
134031019 (irf3)
04622 RIG-I-like receptor signaling pathway
134031019 (irf3)
04623 Cytosolic DNA-sensing pathway
134031019 (irf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
134031019 (irf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134031019 (irf3)
04131 Membrane trafficking [BR:
oep04131
]
134031019 (irf3)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
134031019 (irf3)
Membrane trafficking [BR:
oep04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
134031019 (irf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
SAMP
Motif
Other DBs
NCBI-GeneID:
134031019
NCBI-ProteinID:
XP_062330468
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All DBs
Position
12:17503902..17509994
Genome browser
AA seq
448 aa
AA seq
DB search
MSQSKPLLIPWLRKQIDSGQYPGVGWTNQERTEFCIPWKHALRQDSSSADVLIFKAWAEA
SSGKAQGDASIWKRNFRAALRAKGFQNICDNKNDAANPHRVFRWPGDAPAGGSQEPAEAD
LYQEPPLDGGPEGPRVYAVYLPQETFTGGDSPNEEPDLLERCLNGLNIVEPPEDGQNDQI
FEEFPGQQPYPETMGAEGGVGLPGQPAYPMGEVVGLASEEAMVTQLVSSMSSTMEDHFKT
QFKVSVYFRGQKVSEQLVENDAGFRLVYRPELTRPVRDPLSGLHLVSLPTVGPMVDHNQA
RLTQTILENMGDGLEVGVTGSVIYGWRRGESRVFWSLCKFDHSRTPQEVSKREPQQLYLA
KDFFWGLHQFIIHGGGDSPPISVFLCLGEKWPDPDTRPWEKKLVTVEVVFTSLEMLKEMA
VRGGASSLQSVELQLSLQESLQELMELC
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagtccaaacctctgctcatcccgtggctgagaaagcagatcgatagtgggcag
tacccaggtgttggctggacaaatcaggaacggacggagttctgcatcccgtggaagcac
gcgctcagacaggactcctcgagcgccgacgttctcatattcaaggcgtgggcggaggcc
agtagtggcaaggctcagggagacgcctctatctggaagaggaacttccgcgccgcgctg
cgagccaagggcttccagaacatctgcgacaacaagaacgacgcagccaacccccacaga
gtgttccgctggccgggcgacgccccggcagggggttctcaggagcctgcggaagcagac
ctgtaccaggagccccctctggatggaggtccagagggaccgcgggtctatgctgtttac
cttccgcaggagacgtttacagggggagattcacccaatgaggagccagatctcctggag
cgctgcctgaatgggttaaacatcgtagaacccccagaagatggacaaaatgatcagatt
tttgaagagtttccagggcaacagccatatccagaaacaatgggagctgagggaggagtt
gggttgccgggacaacctgcttacccaatgggtgaagtggtgggcttggccagtgaggaa
gcgatggtgactcagctggtcagcagcatgtccagcaccatggaagatcatttcaagacc
cagttcaaggtgtctgtgtacttcagagggcagaaggtgtctgagcagctggtggagaac
gatgccggcttcagactggtctaccggcctgagctgacccggcccgtgcgggaccccctg
tcggggctgcacctggtgtccctgcccacggtcgggcccatggtggaccacaaccaggcc
cggttgacccagaccatcctggaaaacatgggggacgggctggaggtgggggtgacaggc
tcagtcatatacggctggcggaggggggagagcagggtgttctggagcctgtgtaagttc
gaccacagccggacgccacaagaggtgtccaagagggagccccagcaactgtacctggcc
aaggacttcttctggggactgcatcagttcatcatccacggcggaggtgattccccccct
atctctgtgttcctgtgtctgggagagaagtggcccgacccagacacaaggccctgggag
aagaagctggtgactgtggaggtggtgttcacgtctctggagatgctgaaggagatggcc
gtcaggggtggcgcctcctctctgcagtcggtggaactgcagctgtctctgcaggagtct
ctacaggagcttatggagttgtgttga
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