Osmerus eperlanus (European smelt): 134032599
Help
Entry
134032599 CDS
T10927
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134032599 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134032599 (kdm2ab)
04121 Ubiquitin system [BR:
oep04121
]
134032599 (kdm2ab)
03036 Chromosome and associated proteins [BR:
oep03036
]
134032599 (kdm2ab)
Enzymes [BR:
oep01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
134032599 (kdm2ab)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
134032599 (kdm2ab)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134032599 (kdm2ab)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134032599 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
134032599 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
LRR_6
Cupin_8
PHD
Roughex
LRR_4
Motif
Other DBs
NCBI-GeneID:
134032599
NCBI-ProteinID:
XP_062332588
LinkDB
All DBs
Position
13:complement(4912607..4923382)
Genome browser
AA seq
1332 aa
AA seq
DB search
MDDQHPRYSKRLRTGTRRRYQDDGISDDEIEGKRTFDLDEKLQSDRFNSNLVKHMEGKDF
TFEYIQREGLRDPLIFEKSDGLGIEMPDPDFSVSDVKLFVGSRRMVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDKTTDCQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNTSHLTPEFQKHSLGIG
LTRADVPVNGHANDGTPDDRKDTEEDRPPEGRPEAVKKEEEEEGGDVKAEADPAPPPAPT
KPGVRVNLTPLELEGLWNLLGKLEELPAHKKCVPAGIHNAQALLQDIRALLEEHANDNIK
MSYTGEPIVKWPKRPSWYQPPPPPPQVMYRPRLGASLHRPATPRPIKPASSISALRRRRV
RCKRCAACVRTECGDCTYCHDMRKFGGPGRMKKSCVMRQCLAPCLPLTAKCAVCGEGNQE
TEEASPSAQTLMECTNCAQITHPECIKLPGEGRINKILPSCWECPKCYQGNVSVSESSSD
DDSVASVGSFSSRPPKRPHQEGRAGGGLRVGRRGRPPLSSRRMAPPPSQRLLLQQQLSRN
RAGALELRLKKRIKMERSKILQAKQASSLDPRSSKLLASRGLTPLRSPSGISRGRRLSRG
RGRGAWRGSPYRPSTSPVGVSPQPAPSLPLEARGEMRSRGRGRGVRLRGGGAGRGGGRHQ
AEEQESEDSSSSSSSSSDEEEEEEEEGERRENGLRGGGRRDKENRPQRLGGRTAKEAEGG
EGEESEEANQNGGGEDEEADGDGGEGLRSVEPPGAMASGDPLKGSYVTVTLQRPPRAKRD
PSAIVPKLEAAVVAPRPVAPGNQSFLQSRSLLRPPIRNHGGGADRRGHAHRRGHGHREEG
PRRVGPGRPERINNGASSSRVPPLRIPLLALQDGGGEGREAGGEAGCEREVWVSVFRYLS
RAELCVCMAVCKNWYKWSLDKRLWMRIDLKKRRAVSPQALTGIIVRQPVTLDLSWTTISK
KQLTWLLNRLPGLKDLVVSGCSWSSIAALSSPSCPLLRTLDLRWAEGVRDSQIRDLLNPP
GCDNRSQLRNMQSFRLSGLEISDSTLRMVIRHMPKLTRLDLSHCGGLTDQSIDLLTAVGS
STRNTLVELNLGGCSRLTDVCLRYLRRLSCLALLDLRGCKGVSREACEAFISELSVNALY
CLSEDKLIQRIS
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccaacaccctcgttacagcaaacgcctgcgaacaggaacgcggcggcgttac
caggacgatggcatctccgacgacgagatcgaggggaagaggacgttcgacctggacgag
aagctgcagagcgaccgattcaactccaatttggtcaaacacatggagggcaaagacttc
actttcgagtacatccagcgggagggattgagggaccccctcatcttcgagaagtcggac
ggcctcggcatagagatgccagaccctgacttcagcgtgagcgacgtcaagctgtttgta
ggcagtcgcaggatggtggatgtgatggatgtgaacacccagaagggcatcgagatgtcc
atggcccagtggaggcgctactacgagacgcccccgtcggagagggagaagctgtacaac
gtcatcagcctggagttcagccacaccaagctggagaacctggtcaagaggcccgcctcg
gtggacctgatcgactgggtggacaacatgtggccgaggcacctgaaggagagacagagg
gactccaccaacgccatcatagacatgcactaccccaaagtccagaagtactgtctgatg
agcgtgcagggctgcttcacagacttccacatcgactttgggggaacctcagtgtggtac
cacatcctgaggggaggcaaggtgttctggctgatcccgcccaccccccagaacctggag
ctgtatgagaactgggtgttgtcagggaaacagggagacatcttccttggggacaagacc
actgactgccagaggatcgagctgaagcagggatacaccttcatgatcccctcaggctgg
atccatgctgtgtacactccggaggacaccctggtgtttggagggaacttcctccacagc
ttcaacatccccatgcagctcaacatctacagcatcgaggaccgcacacgggtgccagcc
aagttccgctacccgttctactatgagatgtgctggtacgtgctggagcggtatctctac
tgtctcaccaacacgtctcacctcacccccgagttccagaagcactcccttggcatcggt
ctgacccgcgccgacgtccccgtcaacggccacgccaacgacggcacgccggacgacagg
aaggacacggaggaggaccgcccccctgagggccggcccgaggccgtgaagaaggaggag
gaggaggaggggggcgacgtgaaggccgaggccgaccccgctccccccccggcccccacc
aagccgggggtgagggtgaacctgacccccctggagctggagggcctgtggaacctgctg
gggaagctggaggagctgccggcccacaagaagtgtgtccccgcgggcatccacaacgcc
caggccctgctgcaggacatccgggctctcctggaggagcacgctaacgacaacatcaag
atgtcttacacaggagagcccatcgtcaagtggcccaagaggccgtcgtggtaccagccc
cctccccctcctccccaggtgatgtaccggccccgcctcggcgcctccctccaccgcccc
gccaccccccggcccatcaagcccgcctcgtccatctcggcgctgcggcggcggcgtgtg
cgctgcaagcgctgcgcggcctgcgtgaggacggagtgcggcgactgcacctactgccac
gacatgaggaagttcggggggcccgggcgcatgaagaagagctgcgtcatgcgccagtgt
ctggctccctgcctgcccctgacagccaagtgtgcggtgtgtggggaagggaaccaggag
acggaggaggccagcccttctgctcagaccctcatggagtgcaccaactgtgctcagatc
acccaccccgagtgcatcaagctgccaggggaaggcaggatcaacaagatcctccccagc
tgctgggagtgtcccaaatgctaccagggaaatgtttcagtttcagagtcttccagtgat
gacgacagcgtagcgtccgtcggctccttctcctcccgaccccccaagcggccccaccag
gagggcagggcgggcgggggtctgcgtgtggggcggcgcggccggcccccgctgagctcg
cggcgcatggcgccccctccctcccagagactgctactgcagcagcagctgagccggaac
agagcaggagccctggagctgaggctgaagaagaggatcaagatggagcgcagcaaaatc
ctgcaagcgaaacaggcctcgtccctggacccccgctcctccaagctgctggcctccagg
ggcctgacccccctgcgctccccctccgggatctcccgggggcgcaggctgtcccggggc
cggggcaggggggcctggagggggtccccttaccgcccctccacttcccccgtgggggtg
tcgccccagccggctccgagcctgcccctggaggccaggggggagatgcgcagccggggg
agggggagaggggtgaggctccgggggggcggtgcagggagaggaggggggaggcaccag
gcggaggagcaggagagcgaggactctagcagcagcagcagcagcagcagtgatgaggag
gaggaggaggaagaggagggagagaggagggagaacggactgagaggagggggaaggagg
gacaaggagaaccgaccgcagagactgggaggcaggacagccaaagaagcggaaggggga
gagggggaggagagcgaggaggccaaccaaaacggaggcggggaggacgaggaggcggat
ggggacggaggagaaggactgcggtcggtggagcccccgggggcgatggcgtcgggcgac
cccctgaaggggtcctacgtgaccgtcacgctccagaggccgccacgggccaagcgcgac
ccctccgccatcgtccccaagctggaggcggccgtcgtcgccccccgccccgtcgccccc
ggcaaccagagcttcctccagagccgctccctcctcaggcctcccatcaggaaccacggc
ggcggcgccgaccgccgcggccacgcccaccgcagaggccacggccaccgcgaggaaggc
ccgcggcgagtggggcccggccggccggagaggatcaacaacggagcgtcgtcctcccgc
gtcccccctctccgcatccccctgctggcgctgcaggacggggggggcgaggggcgggag
gcggggggcgaggcgggctgtgagagggaggtgtgggtgtccgtcttccgctacctgagc
cgagccgagctctgcgtctgcatggccgtctgcaagaactggtacaagtggagcctggat
aagaggctgtggatgaggatcgacctgaagaagaggcgtgctgtgagtcctcaggctctg
accggcatcatcgtacgccagcccgtcaccctggacctgtcctggactaccatctccaag
aagcagctcacctggctgctcaaccgcctgccagggctgaaggatctggtggtgtctggc
tgttcctggtcctctatcgcagccctcagctcccccagctgccccctcctgcgcaccctg
gacctgcggtgggccgagggggtccgagacagtcagatcagggacctgctcaacccccca
ggctgtgacaaccgcagccagctgaggaacatgcagtcgttccgtctgtccggcctggag
atcagcgactccaccctgcgcatggtgatccgccacatgcccaagctgaccaggctggac
ctgtcccactgcggcggcctgaccgaccagtccatcgacctgctgacggccgtgggctcc
tccacgcgcaacacgctcgtcgagctcaacctgggaggctgcagcaggctgacggacgtg
tgtctgcgctacctccgccgcctctcctgcctcgccctgctggacctgcgcggctgcaag
ggcgtgtcccgcgaggcctgcgaggccttcatctccgagctgtccgtcaacgccctctac
tgcctatcggaggacaagctcatccagaggatatcctag
DBGET
integrated database retrieval system
