Osmerus eperlanus (European smelt): 134034025
Help
Entry
134034025 CDS
T10927
Symbol
kdm2bb
Name
(RefSeq) lysine (K)-specific demethylase 2Bb isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134034025 (kdm2bb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134034025 (kdm2bb)
04121 Ubiquitin system [BR:
oep04121
]
134034025 (kdm2bb)
03036 Chromosome and associated proteins [BR:
oep03036
]
134034025 (kdm2bb)
Enzymes [BR:
oep01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
134034025 (kdm2bb)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
134034025 (kdm2bb)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134034025 (kdm2bb)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134034025 (kdm2bb)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
134034025 (kdm2bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
F-box
JmjC
Cupin_8
Motif
Other DBs
NCBI-GeneID:
134034025
NCBI-ProteinID:
XP_062334320
LinkDB
All DBs
Position
14:complement(15063542..15092799)
Genome browser
AA seq
1422 aa
AA seq
DB search
MAQTMEGSSESGRRLRPVCRMMYDEDEDFSDVEEIANIRGFNLEQKLASDDYNSNFVQLM
DGKDFTYEYAQREALKVPLIFKVKDGLGIRMPDPEFTVSEIKGLVGSRRSVDVMDVSTQK
GSEMSMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPSNL
KQRQTEATNVISEMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPT
AHNLALYEDWALSGKQSDVFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGG
NILHSFNIPMQLSIYEIENRTKVHSKFRYPFYHEMCWYVLERYVYCLTKRSHLSQELRRQ
PPLTDVEPKPGMDSPSSTSPLQDLDEDSYETQAPDESGPDDPCSPDNRKCKPNDSNSPQP
FKATVSSGDCDDSCVPSAQPSEPPKTPSGSPGPESPSKWTHLTEFELKGLRALVDKLEGL
PENKKCVPEGIEDPQALLDDMKVVLKEHADDDPKMAVTGVPVVCWPKKCVKQRPVNRPKP
KMAASPASAVAAAVKLAASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGR
MKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEDEDDKFNLMLMECSICNEIVHPACLK
VKDSGGVVNDELPNCWECPKCNHAGKTGKAVKQKRGPGFKYASNLPGSLLKEPRLARDIK
EDPDQPAVPTVPSGTAAMAAKRKLEREEAPKRKLVEEPPKKRPPMLGLDGMPRTKLGLDG
MPRTKPEDNPLRKKRKLFDINDEPVVVKKKKKPIKPEDPLSAKMHRPIKTEMEDEDDEEE
DRFTLGRLAVKEKQEEVEEDNEEEPEEEEEDEEEEEEEEEEEEEVTAPEKDGGVEEKAKT
VLNPLLRTSATRESDQSSSSSPRAGPSSESSDAQEKSPAQLKARQQRRRLPNKELSKELS
KELNLEIQKTENCLANQNRRPLKTEDSPANHNRRPPKTEDSPANQNRRPLKTEDSSTNHN
RRLLKTEDGLANPIHRPLKSEDRTANQNHRPVKIEPESEGEEPKPRRPLNNGSSDLGDWL
HPRGRGVNGTPHELSPLGWNRSPPITPICPRPPPCRSPPKCIQMERHVIRPPPISPPPDR
LPLDDGQTHVMSREVWMAVFAQLSHRDLCVCMCICKTWNRWCCDKRLWKRIDLSRCKSIT
PLMLSGIIRRQPVVLDLSWTNISKKQLSWIINRLPGLRVLLLSGCSWVAVSALCTSSCPL
LRTLDVQWVEGLKDAQMRDLLSPPTDHRPGQLDNRSKLRNVVDLRLSGLDITDASLHLLI
RSMPLLSRLDLSYCNHVTDQSVNLLTTAGTTTRDSLTDVNLSVCNRVTDQSLTYFKRCGS
ICHIDLRYCKQVTREGCEQFIAEMSVSVQFGLLEEKLLQKLS
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccatggaagggagttctgaatctggacgcaggctgcgccctgtttgccgg
atgatgtatgatgaagatgaggacttttctgacgtagaggaaattgccaatattaggggc
tttaatctggaacagaaacttgctagtgatgattacaactcaaattttgtccagttgatg
gacggtaaagatttcacttatgagtacgctcagagagaggcattaaaggtgcctctgatt
ttcaaagtcaaagatggcctgggaatcagaatgccagatcctgagttcactgtcagtgag
attaaaggtctggtcggtagccgtcgctcggtggatgtgatggacgtgagcactcagaag
ggctcagagatgagcatggctcagtttgttcgctactacgagacacccgaggaagagcgg
gacaagctcttcaacgtcatcagcctggaattcagccacaccaaactggagaacctcatc
aagaggcccaccgtggttgacctagtggactgggtggataacatgtggccctctaacctg
aagcagagacaaacagaggcaaccaacgtcatctcagagatgaagtaccccaaagtacag
cggtactgcttgatgagcgtcaagggttgctacacggacttccacatcgacttcggcggt
acgtcggtctggtatcacgttttcaagggagggaaggtgttttggctggtgccccccacg
gctcacaaccttgcgttgtacgaggactgggccctgtctggcaaacaaagcgacgtcttc
ctgggagaccgcgctgatgggtgccagagagtggaactcaagcagggctacactttcttc
atcccctctggctggatccacgccgtctacacccccgaagacacactggtgtttggagga
aacatactgcacagcttcaacatccccatgcagcttagcatctatgagatagagaacagg
accaaggttcactccaagttccgctacccgttctaccatgagatgtgctggtacgtgctg
gagaggtacgtgtactgcctgaccaaacgctcccacctctcccaggagctacgcagacaa
ccgccactaacggacgtggagcccaagccgggcatggacagcccctcctccacctcgccc
ctccaggacctggacgaggactcgtacgagacgcaggcccccgacgagtccggcccggat
gacccctgctctcccgacaacaggaagtgtaaaccgaacgactccaacagccctcagccc
ttcaaagcaaccgtgtcgtccggtgactgtgatgacagctgtgtcccctcagcccagcct
tcggagcctcccaaaaccccctcgggctccccggggcccgagtcccccagtaagtggact
cacctgacagagtttgagctcaagggcctgagggccctggtggacaagttggagggtctt
ccagagaacaagaagtgtgtcccggagggaatagaggacccacaagccctgttggatgac
atgaaggttgtgctgaaagagcatgcggacgatgaccccaaaatggccgtcacgggagtt
cctgtggtgtgctggcccaagaagtgtgtcaagcagcggcccgtcaaccggcccaaaccc
aagatggcggcgtcccccgcctcggcggtggcggcagcggtgaagctggcggccagccgc
agcacgtctggcgcccggcggaggaggacgcgatgcaggaaatgcgaggcgtgtctgagg
accgagtgcggagagtgccacttctgcaaagacatgaagaagttcggaggacccggccga
atgaagcagtcctgtatcatgaggcagtgcatcgcgccggtgctgccccacacggccgtg
tgcctcgtctgtggggaggccgggaaggaggacacggtggaggacgaggacgacaagttt
aacctcatgctcatggagtgctccatctgcaacgagatcgtgcatcctgcctgcctcaag
gtgaaagactctggtggagtcgtcaacgatgagttgccaaactgctgggagtgtccaaag
tgcaaccatgcagggaaaacagggaaagctgtcaagcaaaaaagaggaccagggttcaaa
tacgcgtccaaccttccagggtctctgctcaaggagcctcggctggcccgcgacatcaag
gaggatcctgaccagcccgcggtgcccaccgtgcctagcggtaccgctgcgatggccgcc
aagaggaagctggagcgggaggaagcccccaagaggaagttggtggaggagccccccaag
aaacgcccccccatgctgggtctggatggtatgccccggaccaagctgggtctggatggt
atgccccggaccaagcccgaggacaaccccttgaggaagaagaggaaactgttcgacatc
aacgacgaacctgtcgtcgtaaagaaaaagaaaaagcctataaagcctgaggatccttta
tctgccaaaatgcaccggccaatcaagacagagatggaagatgaagacgatgaagaggag
gacaggtttactctgggaaggttagccgtcaaggaaaaacaagaggaggtagaggaggac
aatgaggaggaaccagaggaggaggaagaggatgaagaggaggaggaagaggaggaggag
gaggaagaggaagtaacagcaccagagaaagacggaggagtagaggagaaagccaagact
gttttgaatcccctactcagaacatctgcgaccagggaaagcgaccaatcatcttccagc
tcgcctcgcgccggaccgagcagcgaatcgagcgacgcccaggagaagagccctgcccag
ctgaaggctcgacagcaacggcgacgcctccccaacaaggagctgagtaaggagctgagc
aaggagctcaacctggagatccagaagaccgagaactgtttggccaatcagaaccgcagg
cctcttaagacagaggacagcccggccaatcacaaccgaagaccgccaaagacggaggat
tctccggccaatcagaatcgtcgaccgctcaaaacggaagactcgagcaccaatcacaat
cgcaggttgctaaagaccgaggatggcctggccaatccgattcatcggcctctgaagagt
gaggaccgtacggccaatcagaatcacaggcctgtgaagatagagccggagagcgagggg
gaggagccaaaacccaggaggccgctcaacaacggcagcagcgacctcggagattggctc
caccctaggggtcggggggtcaacgggaccccccacgagctctcccccctggggtggaac
cgaagccccccgatcacccccatatgccctcgaccccccccatgtcggtcgccccccaag
tgcatccagatggaacgccatgtgatccggccccctcctatcagccctcctcctgatagg
ctgccgctggatgacggacagacccatgtgatgagcagggaggtgtggatggcggtgttt
gctcagctgagccacagagacctgtgtgtctgcatgtgcatctgcaagacctggaacaga
tggtgctgtgacaagaggttgtggaagcgcatcgacctgagccgctgcaagtccatcacc
cctctgatgctgagtggaatcatccggagacagccggtggttctggacctcagctggacc
aacatctcgaagaagcagctgagctggatcatcaacaggctgccaggtctgcgggtgctg
ctgctgtcaggctgctcctgggtggctgtgtcggccctgtgcacctccagctgccccctg
ctccgcaccctggacgtccagtgggtggaggggctcaaagacgcccagatgagggacctg
ctgtcccctccgacagaccacaggccaggtcagctggacaacaggagtaagctgcggaac
gtggtggacctccgcctgtctgggctggacatcacggacgcgtccctgcacctcctgatc
cgctccatgcccctgctctcccggctggacctcagctactgtaaccatgtgacggaccag
tcggtcaacctgctgaccaccgccggaaccaccacccgggactcgctgacggacgtcaac
ctgtcggtgtgtaaccgcgttacagaccaatctctgacctacttcaagcgctgtggcagc
atctgtcacatcgacctgcgctactgcaagcaggtgaccagggagggctgtgaacagttc
atagcagagatgtctgtgagcgttcagttcggactgctggaggagaaactgctgcagaag
ctcagctag
DBGET
integrated database retrieval system
