Osmerus eperlanus (European smelt): 134035219
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Entry
134035219 CDS
T10927
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oep03036
]
134035219 (smchd1)
03400 DNA repair and recombination proteins [BR:
oep03400
]
134035219 (smchd1)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
134035219 (smchd1)
DNA repair and recombination proteins [BR:
oep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
134035219 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
SMC_hinge
HATPase_c_3
HATPase_c
DUF7247
Motif
Other DBs
NCBI-GeneID:
134035219
NCBI-ProteinID:
XP_062336135
LinkDB
All DBs
Position
15:11151457..11167307
Genome browser
AA seq
1993 aa
AA seq
DB search
MSELGVEQNSTYESFKADIPSKRLVVYDCRIEKKTSTKRVVNANGLDFNAFLLHISKEFA
IPTNETFVLTTTDRAGINVERYEELQDGNTLHLLQSNDQVLYVATKERINFLPHYDTIVQ
SGMYEYYASEGQKSLPYAFAELIDNSLAATSTITGVRSIDIRLMFDDSLGRPAVVVLDNG
CGMTSKQLNNWAVYRLSKFTREHSSLSSDHSQYIRPEAVPRSLNSDISYFGVGGKQAVFY
IGQSTRMITKPVGCPDVHELVLSKEEFERKERNKEDIYSGFIRNRKVGDSSHVKDEEERF
LHGLIAEEVGKESFTAVVVTGVQPEHITLLKQDFHLWTRELAHLYHYYIHGINGNDMKST
YRNSDCVSNIDIQISLLEKIPKIPRVVNLREIDNDMQTLYINSTADTFEFKAYVESDGTV
EGILRYHPFLYDKETYPEDPYAVPAPMEEDDEDCVILNQARGKRPIFECFWNGRLIPYTT
VSEFDWCAHPKKAAPVPVECYSRFSGVLFTNDRFQVSTNKLTFMDLELQLKDKETFFTRV
VNGQEQRVKIQREFSQWMKNCHEKLDKQVKFSGFTGMTARTDVATKKMQYPWATFSSIEW
EGKTYKTGQYVKSLRTMPIFCGSVAKFLLFGDHDGDVYATGGQVQVIMEPSSLYDEVKII
PISKLDRNVTTAAIKKSIDDELARLPDKVKVTWPENNPWAQNVVRPAGTFLGPLHVDVLN
KKGESVSRMPSSSQSTSKKLLMELKVVWHGPKGDIETNSHIAQHSGKWAFWFKTMENLNK
LGKYTLHLNTVLNESNATVFAGKQLPSYKLHFSITEGSAERFVVGAVTTPLHIGEPFDIP
VEVVDGYGHPTRPPADSKPVLECRGLVVSYEGTAMIGTTFTIKGVTACGKVQNFQRKTFD
MKVVLPGLQQDSQTFKISLLPGIPHSLRVTPKDQHITVENGTPVVFDIEVYDKSGNVTAH
PKLIVRCQLQGVPGSTLVAVDCSNTGAGQIVTKPITLKDIKKEQTVKAKFDVPSQKGVVA
LLRELKVVPSRRVSRLEVYRQEDAQDTTVLKDKEKVDWAVGDTLDNLCYRLSDEGGRTVT
LSEELALKVKVNWTAELNVEELVQGKLPNIQVPTLVQDEHYYQVSYQDLNTTVDTSFIIV
PHPDEPRTMKVTMRESSVRMGEALPGNIYLELTDQYGNKTLSLPPSGLDEVSAKGEGLDE
ASLVFTWQESRHAMVVRGVRFSPGVPGSREISFTWGGFTENVRVNLAAGQPAQFRLVDGP
KEPLQVFNEQRIAQSFILQMCDEWGNPSPGQKVVVMLKTPNSSLKLRLSAASQPVDLEGR
ATFIVDNLSGPKGEYQLEFRGSFNRKPIPGPSVTIIIVPSPNKPVRLAVEYDTNAVFAAG
GTLPVFTVSVMAEDESPMRKLNPASLSMLMWRGGGSVSKVPPKVASQLKCSKPMGDEKDD
RFYFRDKVIPDHVGDYTVQFALCVDMSKGLWSQQYVINVVANEPVKLAPDSQPPTPVISN
NDIIASRTLVEDMTLRIMDMYNNPAGTGLQGKVMVTMRSSSSSATLPVFDSNKKSLQVPL
SEGQARITNLAIMMNSPGDDGQEYTLLFKPSVSGFSSKKHLAAFELPFRFYNDVQNQKQM
SELTKKKDQLSQSIDIYKSLFDTNRQLINELNNQVKDVTNKETFLKSQLRRQSLNVAKLS
SISEIDAAVRESSAEAERVRRQPRRVCSMPDPYKGSQDVLGKIAHLALVVDDDAATVISW
HLLGDMDCVVTKTTVAARKIYDDTQGRQQVLPLDTVFWRSSQKPLPHLRNGKTSFQPTGN
PVFAKDLLIFPENSESCQMVFGSLLGDTILVDDLDSANHYRKGVVQSQVPCPTLLTRKGE
RIRANGKFGGLQNKAPPLERMRSQVFGAPLPQQYHTLMGQIDLLQQSKMAMQKSMQVKME
FENHMQYLKSPEMAKKEEEMAEQEKQLRDIEKTLASTPVRPPPTSAVKRRHEEVDELADI
IIKRTRSSRRDLN
NT seq
5982 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagttgggcgttgagcaaaactcaacttatgaaagcttcaaggcggatatacca
tctaaaagattagttgtgtatgactgtcgcatagagaaaaagacatcgacgaagagagtt
gtaaacgcaaatggcttggactttaatgcttttctactccatatctcgaaggaattcgcc
atccccacaaacgaaacatttgtcttgactacaactgatagagcaggaattaatgttgag
agatatgaggaacttcaagatggcaatacactccaccttttgcagagcaatgatcaggtt
ctatatgtggcaacaaaggaacgcatcaatttcctgcctcattatgacacaattgtccag
agtggcatgtatgaatattatgccagtgaaggtcaaaagtcactaccatatgcttttgca
gagctaatcgacaattcactggcagcaacatctacgatcaccggagttaggtctatagac
atccgtttgatgtttgatgattccctagggagaccagcagtggttgttctagacaacggc
tgtgggatgacttccaagcagctcaataactgggcagtgtacaggctgtctaagttcacc
agggaacacagcagcctttccagtgatcattcccagtatattcgtccagaggccgtccct
cgcagtctcaacagtgatatatcctactttggagtgggagggaaacaagctgtgttctac
atcggacagtcaaccaggatgatcactaaaccagtgggatgtccagatgttcacgagttg
gtcctttccaaggaggagtttgaaagaaaggagagaaacaaggaagatatatacagtggt
ttcatccgaaacagaaaggtgggggattcctcccatgtaaaggatgaggaggagcgcttc
ctccacggcctcatcgcagaggaggtgggaaaggagagcttcacagccgtggtggtgact
ggggtccagcctgagcatatcacccttctcaagcaggacttccacctgtggaccagagag
ctggcacatctatatcactactacattcatggcatcaatggaaacgacatgaaatccact
tatcggaactctgattgtgtctccaacattgacattcagatctccttactggagaagatc
cccaagattcccagggtggtgaacctcagagagatcgataacgacatgcagaccctctac
atcaactccacagcagacacgtttgagttcaaggcttacgtcgaaagcgacggcaccgtg
gagggcattctgagataccatcctttcctttatgataaagagacctaccccgaagatccc
tacgccgtaccagcacccatggaggaagatgatgaggactgtgtaatcctgaaccaggcc
cgggggaaaaggcccatatttgagtgcttctggaatggaagactcataccatacactaca
gtatcagagtttgactggtgtgcccatcccaagaaggcagcgccggtgccagtggagtgc
tacagccggttctccggggtcctgttcaccaacgacaggttccaggtcagcaccaacaag
ctcaccttcatggacttggagctacagctcaaagacaaggagaccttcttcacgcgtgtc
gtcaatggacaggagcaaagagtgaagatccagagagagttctcccagtggatgaagaac
tgccacgagaagctggacaagcaggtgaagttctccggcttcacagggatgactgcacgc
actgacgtggccaccaagaagatgcaatatccctgggcaaccttctcctccatcgagtgg
gaaggcaaaacatacaaaacaggccaatatgtcaagtccctgagaacaatgcccatcttc
tgcggctctgtggctaagttcctgctgttcggagatcacgacggagatgtctacgccacg
ggggggcaggtgcaggttatcatggaaccttccagcctgtacgatgaggtcaagattata
cccatctccaagctggacaggaacgtgacaactgccgcgattaagaaaagcattgacgat
gaactggccagactcccagacaaggtgaaggtcacgtggcctgagaataacccctgggcc
cagaacgttgtgcgccctgcagggacctttttagggccccttcatgtggatgtgctgaac
aagaagggggagtccgtgtcgcggatgccgtcgtcctctcagagcacctccaagaagctt
ctgatggagctgaaggtggtctggcatggtcctaaaggggacatagaaaccaactctcat
atcgcccagcattctggaaagtgggcattctggttcaaaaccatggagaacctaaacaag
ctagggaagtacactttacacctcaacactgttctcaatgagagcaatgccacggtcttt
gctgggaagcagctgcccagctacaaactgcatttctccatcacagagggcagtgcagag
aggtttgtggtgggcgcagtgaccactcctctccacataggggagccctttgacattcct
gtggaggtggtggatggatacggacacccaactcggccccctgcagacagcaaacccgtc
ttggaatgtcgtggtctagtagtgagttatgaaggtacagctatgatcgggaccacattc
accatcaaaggtgtcacagcctgtggaaaagtacagaactttcaacgcaagacatttgat
atgaaagtggtcttgcctgggctccaacaggactcccagactttcaaaatcagtcttctc
cctggtatcccacattctctcagggttacaccaaaggatcagcatatcacagttgagaac
gggacacctgttgtctttgacattgaagtctatgacaaatcagggaacgtcactgcccac
ccaaagctgatcgttcgctgccagttacaaggggttccaggctccacattggtggccgta
gattgcagtaatactggagccggccagatagtgaccaagcccatcaccctgaaggacatc
aagaaagagcagacggtcaaagcgaaatttgatgtgcctagtcagaagggcgtggtggcc
ttgctgcgggagctgaaggtggtccccagcaggcgtgtgtccaggctagaggtgtaccgc
caggaggacgctcaggacaccacggtgctgaaggacaaagagaaggtggactgggccgtc
ggggataccctggacaacctgtgctacaggctgtctgacgaggggggcaggacggtcact
ctgtcagaggaactggccctcaaggtcaaggtgaactggacggcagaattgaatgttgag
gagctggttcaggggaagctgcccaacatccaggttcccaccctggtacaggacgagcac
tactaccaggtctcctaccaggacctcaacaccactgtcgacacctccttcatcatagtg
ccccaccctgatgagcccaggaccatgaaggttaccatgagagagagctctgtgaggatg
ggcgaggctctacctggaaatatctacttggagctgacggaccagtacgggaacaagact
ctgtctctgcccccgagtggcctggacgaggtcagcgcaaagggagaaggtctggatgag
gcgtcgctggtgttcacctggcaggagagccgacacgccatggtggtgaggggcgtgcgc
ttctccccaggggtacctggctcccgggagatcagcttcacctgggggggcttcacagag
aacgtgagggtcaacctggctgccggccagcctgcccagttcagactggtggacgggcct
aaggagcccctgcaggtttttaatgagcagagaatcgcacagtccttcatcctgcaaatg
tgtgatgagtgggggaatccctccccaggacagaaggtggttgtgatgctgaagaccccc
aacagctccctgaagctaagattgtctgctgcctcccagccagttgacttggagggcaga
gccactttcatagtggacaacctgagcggtcctaagggggagtaccagctggagttccgg
ggttccttcaacaggaagcccatccctggcccgtcagtcacgatcatcatcgtccccagc
cccaacaagcctgtcagactggccgtggagtacgacaccaacgctgtgtttgctgctgga
ggcacactcccagtgttcaccgtgtcggtgatggcggaggacgagagccccatgaggaag
ctgaaccctgcgtctctgtccatgctcatgtggaggggcgggggctccgtctccaaggtc
ccgcctaaagtggcctctcagctcaagtgcagcaaacccatgggggatgagaaggatgac
cgtttttacttcagagacaaagtcatcccagaccatgtgggagattacacggtgcagttt
gccctgtgtgtggacatgtccaaaggcctgtggagccagcagtatgtcataaacgtggtg
gctaacgaacctgtcaagctggccccagactcacagccaccaaccccagtcatctccaac
aatgacatcatcgccagccggaccctggtggaggatatgactctgaggataatggacatg
tataacaacccggcaggcacggggctgcaggggaaggtgatggtcaccatgaggagctcc
agcagctcagccactctgcccgtgttcgacagcaacaagaagagcctgcaagtccccctg
tctgagggccaggcccgcatcactaacctggcgatcatgatgaacagccctggtgatgac
ggacaggagtacaccctgctattcaaaccctccgtctcggggttcagctccaagaaacac
ctggctgccttcgaactgcccttccgcttctacaacgacgtccagaaccagaagcagatg
tcggagctgaccaagaagaaagaccagctctcccagtccatcgacatctacaagagcttg
tttgacaccaacagacagctcatcaatgagctcaacaaccaggtcaaagacgtcaccaac
aaagagacctttctgaaatcccagttacggagacaaagtctaaacgttgccaagttatca
tctatttcagagatcgacgcagccgtccgtgagagctcggcggaggcagagagggtcaga
cgccagcccaggagagtgtgctccatgcctgatccctacaagggcagtcaggacgtcctg
ggaaaaatcgcccacctggcgttggtggtggatgacgatgccgccacggtcatatcctgg
catctcctaggagacatggactgcgtggtcaccaagacgacagttgcggcacggaagatc
tacgatgacacccaggggaggcagcaggtcttgcctttggacacagtgttctggagaagc
agccagaaacctctaccccacctgcgaaacggtaaaaccagctttcaacccactggaaac
cctgtgtttgccaaagatcttctcatcttcccagagaattctgaaagctgccagatggtg
tttggcagcctcctgggagataccattttggtggatgaccttgactctgctaaccactac
aggaaaggggtggtccagagccaggtcccttgccccactctcctgaccagaaagggagag
aggatccgtgcaaacggcaagtttgggggtttgcagaacaaagccccccccctcgaacga
atgcgctcccaggtgtttggtgcacccctgccccagcagtaccacaccctcatggggcag
atagatttgctccaacagagcaagatggccatgcagaagagcatgcaggtgaagatggag
tttgagaaccacatgcagtacctgaagtctcctgagatggcgaagaaggaggaggagatg
gcagaacaggagaagcagctcagagacattgaaaagacgctcgccagcaccccagtgcga
ccaccgccaacttctgctgtgaagaggaggcatgaggaggttgatgaactggctgatatc
attatcaaaagaacaaggtcatcaagaagggatttaaattag
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integrated database retrieval system
